Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l06
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0207 + 1528951-1529499 42 4e-04
07_01_0208 + 1532691-1533209 38 0.011
02_03_0189 + 16182358-16182925,16183133-16183188 38 0.011
07_01_0211 + 1568646-1568716,1568722-1569085 37 0.014
07_01_0210 + 1555941-1556390 37 0.014
07_01_0209 + 1544347-1544796 37 0.014
04_03_0203 + 12640502-12641074 37 0.014
02_05_1001 + 33423562-33424098 34 0.13
07_01_0212 + 1571631-1572149 33 0.17
07_01_0203 + 1469575-1470045 33 0.17
07_01_0199 - 1420982-1421452 33 0.17
07_01_0195 - 1387831-1388301 33 0.17
07_01_0191 - 1354678-1355148 33 0.17
07_01_0187 - 1321525-1321995 33 0.17
07_01_0200 + 1433859-1434377 33 0.23
07_01_0196 + 1400708-1401226 33 0.23
07_01_0192 + 1367558-1368076 33 0.23
07_01_0188 + 1334405-1334923 33 0.23
04_03_0204 + 12643435-12644001 33 0.23
06_01_0746 + 5580755-5582119 33 0.30
07_01_0202 + 1464905-1465423 32 0.40
03_05_1029 - 29835389-29835979 32 0.53
07_01_0198 + 1417625-1418104 31 0.70
07_01_0194 + 1384474-1384953 31 0.70
07_01_0190 + 1351321-1351800 31 0.70
07_01_0186 + 1318168-1318647 31 0.70
07_01_0359 - 2633735-2634115,2634345-2634600,2634708-2635552,263... 31 0.92
12_02_1226 - 27182423-27182768,27182855-27183765 30 2.1
07_03_1029 + 23379890-23380139,23380506-23381131 30 2.1
06_02_0304 + 14053190-14053717 29 2.8
03_05_0835 - 28065505-28065656,28066547-28066604,28067535-280676... 29 2.8
10_02_0159 + 6020441-6020971 29 3.7
09_04_0466 - 17838344-17838631 29 3.7
05_07_0065 + 27446138-27446296,27446736-27447138,27448144-274484... 29 3.7
02_05_0365 - 28309587-28310132 29 3.7
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 29 3.7
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 29 4.9
06_03_0565 - 22308074-22309510,22309670-22309723 29 4.9
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508... 29 4.9
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779... 28 6.5
03_01_0124 + 971213-971341,971741-971769,971877-972078,972839-97... 28 6.5
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688 28 6.5
01_04_0090 - 15940935-15941438 28 6.5
11_08_0052 + 28082124-28082170,28082340-28082455,28083151-280831... 28 8.6
11_01_0640 - 5142578-5142628,5142780-5143139,5144180-5144356 28 8.6
06_01_0588 - 4224348-4224516,4224674-4224767,4224872-4225490,422... 28 8.6
>07_01_0207 + 1528951-1529499
Length = 182
Score = 42.3 bits (95), Expect = 4e-04
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Frame = -3
Query: 718 WDYELEEMAELWARQCQKRHDEC---RNTIRFNALQNMDVRPVVPKVTEAQLLADAVGAW 548
WD + AE +A QCQ T + + V P T + A AVGAW
Sbjct: 56 WDDTVAAYAESYAAQCQADCQPVSTNNGTATYGENIYVVVGPAGGNDTSSSPAAAAVGAW 115
Query: 547 FSGSRVLQSEHVWSFRHGN-CSAPGGCNSHWYSTAAWASTWRLGCSQALC 401
+E W N CSAP G + Y+ W +T +GC++ +C
Sbjct: 116 -------AAEEQWYDPDTNGCSAPAGESCDHYTQLVWNATTAIGCAEVVC 158
>07_01_0208 + 1532691-1533209
Length = 172
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -3
Query: 562 AVGAWFSGSRVLQ--SEHVWSFRHGN-CSAPGGCNSHWYSTAAWASTWRLGCSQALCTAT 392
A G W + S V SE W N CSAP G + Y+ W S+ +GC++ +C +
Sbjct: 92 AGGNWTAASAVSAWVSEKQWYNHTSNSCSAPSGQSCGHYTQVVWRSSTAIGCARVVCNGS 151
>02_03_0189 + 16182358-16182925,16183133-16183188
Length = 207
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -3
Query: 565 DAVGAWFSGSRVLQSEHVW-SFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALCTATK 389
DAV +W SE W + +C APGG Y WA T ++GC+ C A +
Sbjct: 108 DAVASW-------ASEKQWYNCSDDSCDAPGGRGCTHYKQMVWAKTTKVGCASVSCDANR 160
>07_01_0211 + 1568646-1568716,1568722-1569085
Length = 144
Score = 37.1 bits (82), Expect = 0.014
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -3
Query: 562 AVGAWFSGSRVLQ--SEHVWSFRHGN-CSAPGGCNSHWYSTAAWASTWRLGCSQALC 401
A G W + S V +E W N CSAP G + Y+ W+++ +GC++ +C
Sbjct: 64 AGGDWTAASAVSSWVAEKQWYDHDSNSCSAPAGSSCGHYTQVVWSNSTAIGCARVVC 120
>07_01_0210 + 1555941-1556390
Length = 149
Score = 37.1 bits (82), Expect = 0.014
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -3
Query: 562 AVGAWFSGSRVLQ--SEHVWSFRHGN-CSAPGGCNSHWYSTAAWASTWRLGCSQALC 401
A G W + S V +E W N CSAP G + Y+ W+++ +GC++ +C
Sbjct: 69 AGGDWTAASAVSSWVAEKQWYDHDSNSCSAPAGSSCGHYTQVVWSNSTAIGCARVVC 125
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 148 FTFCNYGPAGNIDGYPIY 95
F CNY P GN+DG Y
Sbjct: 132 FITCNYSPPGNVDGESPY 149
>07_01_0209 + 1544347-1544796
Length = 149
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = -3
Query: 562 AVGAWFSGSRVLQ--SEHVWSFRHGN--CSAPGGCNSHWYSTAAWASTWRLGCSQALC 401
A G W + S V SE W + HG+ CSAP G + Y+ W + +GC++ +C
Sbjct: 69 AGGDWTAASAVSAWVSEKQW-YDHGSNSCSAPEGSSCGHYTQVVWRDSTAIGCARVVC 125
>04_03_0203 + 12640502-12641074
Length = 190
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -3
Query: 568 ADAVGAWFSGSRVLQSEHVWSFRHGN-CSAPGGCNSHWYSTAAWASTWRLGCSQALCTAT 392
ADA W G+R W R G+ C+AP G Y+ W +T ++GC++ LC
Sbjct: 110 ADASAHWAEGAR-------WYDRDGDSCAAPPGRCCGEYTQMVWRATTQIGCARWLCRCL 162
Query: 391 KKSC 380
+C
Sbjct: 163 GDTC 166
>02_05_1001 + 33423562-33424098
Length = 178
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = -3
Query: 568 ADAVGAWFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALC 401
AD V AW S R L S R G+ +A G H Y+ W T +GC+ A C
Sbjct: 104 ADVVAAWVSRERALYDAASNSCRGGDAAACG----H-YTQVVWRRTTAVGCALATC 154
>07_01_0212 + 1571631-1572149
Length = 172
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -3
Query: 583 EAQLLADAVGAWFSGSRVLQSEHVWSFRHGN-CSAPGGCNSHWYSTAAWASTWRLGCSQA 407
++ ADAV +W S + L + W N C+AP G + Y+ W ++ +GC+
Sbjct: 89 QSSTAADAVASWVSPT--LDGD--WYHHDTNTCTAPAGESCGHYTQVVWYNSTDIGCATV 144
Query: 406 LC 401
+C
Sbjct: 145 VC 146
>07_01_0203 + 1469575-1470045
Length = 156
Score = 33.5 bits (73), Expect = 0.17
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Frame = -3
Query: 718 WDYELEEMAELWARQ----CQKRHDECRNTIRFNALQNMDVRPVVPKVTEAQLLADAVGA 551
WD L A+ +A Q C RH + RN ++ +N+ P V +A A +V
Sbjct: 38 WDDNLAAYAQGYANQRAGDCALRHSD-RNNYQYG--ENLSWNPSV----QAWTAASSVDQ 90
Query: 550 WFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALCTATK 389
W + S+ + + S GG Y+ W T +GC+ C A +
Sbjct: 91 WVAEKG--------SYDYASNSCVGGAMCGHYTQVVWRDTTAVGCAAVACNANR 136
>07_01_0199 - 1420982-1421452
Length = 156
Score = 33.5 bits (73), Expect = 0.17
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Frame = -3
Query: 718 WDYELEEMAELWARQ----CQKRHDECRNTIRFNALQNMDVRPVVPKVTEAQLLADAVGA 551
WD L A+ +A Q C RH + RN ++ +N+ P V +A A +V
Sbjct: 38 WDDNLAAYAQGYANQRAGDCALRHSD-RNNYQYG--ENLSWNPSV----QAWTAASSVDQ 90
Query: 550 WFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALCTATK 389
W + S+ + + S GG Y+ W T +GC+ C A +
Sbjct: 91 WVAEKG--------SYDYASNSCVGGAMCGHYTQVVWRDTTAVGCAAVACNANR 136
>07_01_0195 - 1387831-1388301
Length = 156
Score = 33.5 bits (73), Expect = 0.17
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Frame = -3
Query: 718 WDYELEEMAELWARQ----CQKRHDECRNTIRFNALQNMDVRPVVPKVTEAQLLADAVGA 551
WD L A+ +A Q C RH + RN ++ +N+ P V +A A +V
Sbjct: 38 WDDNLAAYAQGYANQRAGDCALRHSD-RNNYQYG--ENLSWNPSV----QAWTAASSVDQ 90
Query: 550 WFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALCTATK 389
W + S+ + + S GG Y+ W T +GC+ C A +
Sbjct: 91 WVAEKG--------SYDYASNSCVGGAMCGHYTQVVWRDTTAVGCAAVACNANR 136
>07_01_0191 - 1354678-1355148
Length = 156
Score = 33.5 bits (73), Expect = 0.17
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Frame = -3
Query: 718 WDYELEEMAELWARQ----CQKRHDECRNTIRFNALQNMDVRPVVPKVTEAQLLADAVGA 551
WD L A+ +A Q C RH + RN ++ +N+ P V +A A +V
Sbjct: 38 WDDNLAAYAQGYANQRAGDCALRHSD-RNNYQYG--ENLSWNPSV----QAWTAASSVDQ 90
Query: 550 WFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALCTATK 389
W + S+ + + S GG Y+ W T +GC+ C A +
Sbjct: 91 WVAEKG--------SYDYASNSCVGGAMCGHYTQVVWRDTTAVGCAAVACNANR 136
>07_01_0187 - 1321525-1321995
Length = 156
Score = 33.5 bits (73), Expect = 0.17
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Frame = -3
Query: 718 WDYELEEMAELWARQ----CQKRHDECRNTIRFNALQNMDVRPVVPKVTEAQLLADAVGA 551
WD L A+ +A Q C RH + RN ++ +N+ P V +A A +V
Sbjct: 38 WDDNLAAYAQGYANQRAGDCALRHSD-RNNYQYG--ENLSWNPSV----QAWTAASSVDQ 90
Query: 550 WFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALCTATK 389
W + S+ + + S GG Y+ W T +GC+ C A +
Sbjct: 91 WVAEKG--------SYDYASNSCVGGAMCGHYTQVVWRDTTAVGCAAVACNANR 136
>07_01_0200 + 1433859-1434377
Length = 172
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -3
Query: 580 AQLLADAVGAWFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALC 401
A ADAVG W ++++V+S C+ + Y+ W ST +GC++A C
Sbjct: 95 ASTAADAVGLWMEE----KADYVYS--SNTCTRGALLDCGHYTQVVWRSTTSIGCARAAC 148
Query: 400 T 398
+
Sbjct: 149 S 149
>07_01_0196 + 1400708-1401226
Length = 172
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -3
Query: 580 AQLLADAVGAWFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALC 401
A ADAVG W ++++V+S C+ + Y+ W ST +GC++A C
Sbjct: 95 ASTAADAVGLWMEE----KADYVYS--SNTCTRGALLDCGHYTQVVWRSTTSIGCARAAC 148
Query: 400 T 398
+
Sbjct: 149 S 149
>07_01_0192 + 1367558-1368076
Length = 172
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -3
Query: 580 AQLLADAVGAWFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALC 401
A ADAVG W ++++V+S C+ + Y+ W ST +GC++A C
Sbjct: 95 ASTAADAVGLWMEE----KADYVYS--SNTCTRGALLDCGHYTQVVWRSTTSIGCARAAC 148
Query: 400 T 398
+
Sbjct: 149 S 149
>07_01_0188 + 1334405-1334923
Length = 172
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -3
Query: 580 AQLLADAVGAWFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALC 401
A ADAVG W ++++V+S C+ + Y+ W ST +GC++A C
Sbjct: 95 ASTAADAVGLWMEE----KADYVYS--SNTCTRGALLDCGHYTQVVWRSTTSIGCARAAC 148
Query: 400 T 398
+
Sbjct: 149 S 149
>04_03_0204 + 12643435-12644001
Length = 188
Score = 33.1 bits (72), Expect = 0.23
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 496 GNCSAPGGCNSHWYSTAAWASTWRLGCSQALC 401
G C+AP G Y+ W +T +LGC++ C
Sbjct: 133 GRCAAPPGRTCGAYTQVVWRATTQLGCARRTC 164
>06_01_0746 + 5580755-5582119
Length = 454
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +2
Query: 395 GSTQSLRATKTPSRRPSCR*IPMRIASTGGATVTVPE 505
G ++ R K PS+ PS +P+R S GGA V VPE
Sbjct: 279 GDVRTTRLIKNPSQ-PSLYFVPLRGISVGGARVAVPE 314
>07_01_0202 + 1464905-1465423
Length = 172
Score = 32.3 bits (70), Expect = 0.40
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = -3
Query: 568 ADAVGAWFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALCT--A 395
ADAVG W ++ +V+S C+ + Y+ W ST +GC +A+C
Sbjct: 100 ADAVGLWMEE----KASYVYS--SNTCTKGALLDCGHYTQIVWRSTTSIGCGRAVCNNGD 153
Query: 394 TKKSCSRFRRRATPSE 347
SC+ F P+E
Sbjct: 154 VLISCNYFPPGNVPNE 169
>03_05_1029 - 29835389-29835979
Length = 196
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 505 FRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALCT 398
+ H N S G Y+ W T +GC+QA CT
Sbjct: 139 YAHANNSCAPGQQCGTYTQVVWRRTAEVGCAQATCT 174
>07_01_0198 + 1417625-1418104
Length = 159
Score = 31.5 bits (68), Expect = 0.70
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 148 FTFCNYGPAGNIDGYPIYEAGLSCS 74
F CNY PAGN G +E GL+ S
Sbjct: 134 FITCNYNPAGNFQGERPFERGLTLS 158
>07_01_0194 + 1384474-1384953
Length = 159
Score = 31.5 bits (68), Expect = 0.70
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 148 FTFCNYGPAGNIDGYPIYEAGLSCS 74
F CNY PAGN G +E GL+ S
Sbjct: 134 FITCNYNPAGNFQGERPFERGLTLS 158
>07_01_0190 + 1351321-1351800
Length = 159
Score = 31.5 bits (68), Expect = 0.70
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 148 FTFCNYGPAGNIDGYPIYEAGLSCS 74
F CNY PAGN G +E GL+ S
Sbjct: 134 FITCNYNPAGNFQGERPFERGLTLS 158
>07_01_0186 + 1318168-1318647
Length = 159
Score = 31.5 bits (68), Expect = 0.70
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 148 FTFCNYGPAGNIDGYPIYEAGLSCS 74
F CNY PAGN G +E GL+ S
Sbjct: 134 FITCNYNPAGNFQGERPFERGLTLS 158
>07_01_0359 -
2633735-2634115,2634345-2634600,2634708-2635552,
2635681-2635956,2636778-2636941,2637924-2638197
Length = 731
Score = 31.1 bits (67), Expect = 0.92
Identities = 27/112 (24%), Positives = 44/112 (39%)
Frame = +3
Query: 273 VAVVMYLVLLKMFSPVTRVDVFVKSSDGVALLRKREHDFFVAVHKA*EQPRRQVDAQAAV 452
V+ V Y VL K + V+ + +S+ V + +F V V + P Q +
Sbjct: 162 VSFVTYFVLWKSYKHVSNMRAAARSTPDV-----KPEEFAVLVRDVPKPPPDQTIKDSVD 216
Query: 453 EYQ*ELHPPGALQLPCLNDHTCSDCSTRDPENHAPTASANN*ASVTLGTTGR 608
Y LHP + + DHT +D ++ E H + TTG+
Sbjct: 217 SYFRALHPDTFYRSMVVTDHTKADKIYQEIEGHKQKIARAEVVYAESKTTGK 268
>12_02_1226 - 27182423-27182768,27182855-27183765
Length = 418
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -3
Query: 511 WSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALCTA 395
+ ++ +C A C +H Y+ W +T +GC + +CT+
Sbjct: 361 YDYKSNSCKAGAMC-TH-YTAIVWKNTTAVGCGRVVCTS 397
>07_03_1029 + 23379890-23380139,23380506-23381131
Length = 291
Score = 29.9 bits (64), Expect = 2.1
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Frame = -3
Query: 607 RPVVPKVTEAQLLADAVGAWFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTW 428
+P P+ + + DA + ++ S VL V S G A G +SH S A STW
Sbjct: 183 QPSPPQHADQDMSTDASASSYACSDVL----VGSCNGGGGGAGGTASSHGQSLALSMSTW 238
Query: 427 RLGCSQ--ALCTATKKSCSRFRRRATPSEDLTNTSTRVTGE 311
+ + ++ A + S S RR +P + S G+
Sbjct: 239 SVASTAGGSVVVAAESSSSENRRVDSPGGAVPRKSIDTFGQ 279
>06_02_0304 + 14053190-14053717
Length = 175
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -3
Query: 493 NCSAPGGCNSHWYSTAAWASTWRLGCSQALCT--ATKKSCS 377
N PG H Y+ WA T RLGC+ C AT CS
Sbjct: 112 NTCVPGRRCGH-YTQVTWARTTRLGCAAVTCDSGATFVVCS 151
>03_05_0835 -
28065505-28065656,28066547-28066604,28067535-28067642,
28067796-28067855,28067940-28068015,28068470-28068627,
28068787-28068849,28069003-28069142,28070793-28071882
Length = 634
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 371 SQESNTVRRLDKHIDASHRREHFKEDQVHDDG 276
S+E + VR D+ +DASH + +E++ D+G
Sbjct: 272 SEEKSEVRTDDERVDASHMSDTEEEEEFADEG 303
>10_02_0159 + 6020441-6020971
Length = 176
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -3
Query: 568 ADAVGAWFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALCTATK 389
ADAV +W + + + C PG H Y+ W + R+GC++ +C A +
Sbjct: 97 ADAVASWVGEKKN------YHYDTNTCD-PGKVCGH-YTQVVWRKSVRIGCARVVCAANR 148
>09_04_0466 - 17838344-17838631
Length = 95
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -3
Query: 469 NSHWYSTAAWASTWRLGCSQALCTATKKSCSRFRRRATP---SEDLTNTSTRVTGENILR 299
+ HW W WR+ S T S R RR P S D+ T VT + LR
Sbjct: 14 HGHWRQALTWRGRWRMRPS-----TTSSSVGRGWRRTRPLATSSDVAWTVEDVTVVDELR 68
Query: 298 RTRYMT 281
R +MT
Sbjct: 69 RGVWMT 74
>05_07_0065 +
27446138-27446296,27446736-27447138,27448144-27448430,
27448550-27448810
Length = 369
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 437 VYLASWLLSSFVYCHEKIMLAFSQESNTVRRLDKHIDASHRREHFKEDQVHDDGN 273
+YLA L S+ H+ I+LAF +L KH D + F + DG+
Sbjct: 141 IYLAFQLQFSYRLTHQHIILAFGSSIPVNNKLTKHQDKTSFTFDFTTGKAFVDGS 195
>02_05_0365 - 28309587-28310132
Length = 181
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -1
Query: 195 R*RTYVKQMMNRKSSHSRSVTTARPGTSMGTRFTKPVCHAVTAHRGRDAGIGLTGLCARS 16
R R ++ NRKS R+ RP + F+K HA HRG I + A+
Sbjct: 61 RSRKEAEERPNRKSWKQRTDMYMRPFL-LNVFFSKRFVHAKVVHRGTSKVISVASTNAKD 119
Query: 15 LET 7
L T
Sbjct: 120 LRT 122
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/67 (34%), Positives = 27/67 (40%)
Frame = +1
Query: 19 SSTKPCESDPRIASPVGSYCMTDRLRKSGTHRCSRPGRSYRT*MRRFSVHHLLYVRSSSP 198
SS P S P SP+ S LR S S P S S+HH L+ S P
Sbjct: 28 SSPSPSTSTPPPPSPIPSTSPRPTLRSSSLPPASTPSPSSSASSSSGSLHH-LHPTHSLP 86
Query: 199 KYLDAAA 219
+ AAA
Sbjct: 87 AFSAAAA 93
>09_06_0076 + 20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = -1
Query: 609 CVP*FLKLPK--LSYWLTQLERGSRDHGCYSQSMYGRSGTVTVAPPVDAILIGIQRQLGR 436
C+P LP+ S W TQ++ S GC S R PPV L+G Q L
Sbjct: 934 CLPCKTSLPRESASAWWTQVDTVS-GQGCGESSPLCRPPAYPPEPPVVLSLVGGQLVLRL 992
Query: 435 LLGVLVAL 412
GV+V L
Sbjct: 993 PSGVVVNL 1000
>06_03_0565 - 22308074-22309510,22309670-22309723
Length = 496
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 554 SNCVSQ*LSFG--NFRNYGTHVHVLKCIKPNSIPAFVVTFLTLTRPQFRHL 700
++C++Q +F T V LK + P S+P F VTF+ L P + H+
Sbjct: 268 NSCLAQLSTFSVEQAATMDTRVGGLK-VPPASLPVFPVTFIILLAPVYDHI 317
>05_01_0573 -
5083030-5083151,5084639-5084738,5084790-5084829,
5085122-5085567
Length = 235
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/70 (30%), Positives = 25/70 (35%)
Frame = -3
Query: 559 VGAWFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALCTATKKSC 380
+ AW S L + + GN GG HW S + R CS CT K S
Sbjct: 44 IEAWGGSSSKLWGDEARIYPMGN-GWQGGSTDHWSSVS------RSHCSNGCCTTQKPSS 96
Query: 379 SRFRRRATPS 350
R PS
Sbjct: 97 RRVLPPPNPS 106
>08_02_1170 +
24876197-24877070,24877563-24877606,24877805-24877900,
24877999-24878544
Length = 519
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 476 WMQFSLVFNGSLGVYLASWLLSSFVYCHEKIMLAFSQESNTVRRLDKHIDASH-RRE 309
WM F L ++ ++LA WL +YC +NT + L ++D SH RRE
Sbjct: 243 WMSFGLPM--AIILFLALWLTLCLMYC----------SNNTAKALSAYLDRSHLRRE 287
>03_01_0124 +
971213-971341,971741-971769,971877-972078,972839-973081,
973172-973273,973743-974180
Length = 380
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 485 RPRWMQFSLVFNGSLGVYLASWLLSSFVY 399
RPRW QF + +G YL + + +VY
Sbjct: 19 RPRWQQFLICSSGFFFGYLVNGICEEYVY 47
>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
Length = 308
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 492 LPCLNDHT-CSDCSTRDPENHAPT 560
L C N HT CS+C R ENH PT
Sbjct: 72 LQCPNGHTICSNCKHR-VENHCPT 94
>01_04_0090 - 15940935-15941438
Length = 167
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -3
Query: 568 ADAVGAWFSGSRVLQSEHVWSFRHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALCTATK 389
ADAV +W + + +++ +C+A C Y+ W + +GC++ C A +
Sbjct: 96 ADAVRSW------VDEKKYYNYASNSCAAGKVCGH--YTQVVWRDSTNVGCARVRCDANR 147
>11_08_0052 +
28082124-28082170,28082340-28082455,28083151-28083173,
28083260-28083362,28083650-28083741
Length = 126
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 575 LSFGNFRNYGTHVHVLKCIKPNSIPAFVVTFLTL 676
L+F NF G H + C+K S+P F F+ +
Sbjct: 37 LAFSNFSKDGCHNKDIFCVKAVSLPQFHFPFIVV 70
>11_01_0640 - 5142578-5142628,5142780-5143139,5144180-5144356
Length = 195
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -1
Query: 171 MMNRKSSHSRSVTTARPGTSMGTRFTKPVCHAVTAHRGRDAGIGLTGLCARSL 13
M R+ +R+VTT+ T T A TA RGR G G G A ++
Sbjct: 1 MAERRELRARAVTTSGAIAKAATTSTGTARAATTAGRGRGRGRGRGGKPATAI 53
>06_01_0588 -
4224348-4224516,4224674-4224767,4224872-4225490,
4225609-4225734,4225819-4226487,4226728-4226853,
4226940-4227266,4227366-4227439,4228469-4228583,
4228871-4229164
Length = 870
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 391 KKSCSRFRRRATPSEDLTNTSTRVTGENILRRTRYMTTAT 272
KK C+R RRR+ ED+ N + +G N + +T T
Sbjct: 647 KKKCNRTRRRSVVCEDMANAT--CSGNNTSEQQASTSTTT 684
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,234,214
Number of Sequences: 37544
Number of extensions: 474255
Number of successful extensions: 1534
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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