Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l06
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70308-2|CAA94349.1| 212|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z82092-2|CAB05011.1| 212|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z70308-5|CAA94348.1| 207|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z70308-6|CAA94344.1| 207|Caenorhabditis elegans Hypothetical pr... 41 8e-04
Z70307-4|CAA94330.1| 209|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z70307-2|CAA94335.1| 208|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z68108-4|CAA92136.1| 246|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z73896-3|CAA98060.1| 208|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z70308-12|CAA94354.1| 211|Caenorhabditis elegans Hypothetical p... 40 0.002
Z70307-17|CAA94341.1| 211|Caenorhabditis elegans Hypothetical p... 40 0.002
Z70308-3|CAA94350.1| 207|Caenorhabditis elegans Hypothetical pr... 39 0.004
U64848-6|AAB04885.1| 208|Caenorhabditis elegans Hypothetical pr... 39 0.004
AC006655-3|AAF39874.1| 208|Caenorhabditis elegans Hypothetical ... 38 0.005
Z70308-1|CAA94351.1| 213|Caenorhabditis elegans Hypothetical pr... 38 0.007
AL032623-6|CAA21513.1| 198|Caenorhabditis elegans Hypothetical ... 38 0.010
AF016661-5|AAB66052.1| 207|Caenorhabditis elegans Hypothetical ... 36 0.022
Z92972-5|CAB07484.1| 212|Caenorhabditis elegans Hypothetical pr... 36 0.029
Z70307-6|CAA94332.1| 210|Caenorhabditis elegans Hypothetical pr... 36 0.029
AL021566-5|CAA16500.1| 212|Caenorhabditis elegans Hypothetical ... 36 0.029
AF067942-7|AAG45571.2| 200|Caenorhabditis elegans Hypothetical ... 36 0.029
AC024805-13|AAK39335.1| 246|Caenorhabditis elegans Hypothetical... 36 0.029
Z73911-1|CAA98140.1| 262|Caenorhabditis elegans Hypothetical pr... 35 0.067
Z70307-1|CAA94334.1| 205|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z81527-1|CAB04269.3| 290|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z70307-5|CAA94331.1| 209|Caenorhabditis elegans Hypothetical pr... 33 0.16
U42839-2|AAC69015.1| 425|Caenorhabditis elegans Venom-allergen-... 33 0.27
U42839-1|AAM54195.1| 424|Caenorhabditis elegans Venom-allergen-... 33 0.27
AF112356-1|AAD27559.1| 425|Caenorhabditis elegans venom allerge... 33 0.27
AC006655-2|AAF39876.1| 208|Caenorhabditis elegans Hypothetical ... 33 0.27
Z82092-1|CAB05010.1| 196|Caenorhabditis elegans Hypothetical pr... 32 0.47
AC024805-12|AAK39343.1| 557|Caenorhabditis elegans Hypothetical... 30 1.4
Z68760-5|CAE17823.1| 161|Caenorhabditis elegans Hypothetical pr... 30 1.9
U28734-4|AAR30209.1| 477|Caenorhabditis elegans K (potassium) v... 29 2.5
U28734-3|AAR25654.1| 495|Caenorhabditis elegans K (potassium) v... 29 2.5
U28734-2|AAB52604.3| 490|Caenorhabditis elegans K (potassium) v... 29 2.5
AY150829-1|AAN75511.1| 477|Caenorhabditis elegans KVS-2 protein. 29 2.5
AF541979-1|AAO65852.1| 490|Caenorhabditis elegans KVS-1 protein. 29 2.5
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 29 3.3
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 29 3.3
AF100659-1|AAC68963.1| 232|Caenorhabditis elegans Hypothetical ... 29 4.4
>Z70308-2|CAA94349.1| 212|Caenorhabditis elegans Hypothetical
protein F49E11.5 protein.
Length = 212
Score = 48.4 bits (110), Expect = 5e-06
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRCGDRT 38
C Y PAGN G IY++G +CSNCP GT C T
Sbjct: 175 CLYSPAGNYIGMDIYKSGETCSNCPDGTNCESST 208
Score = 28.7 bits (61), Expect = 4.4
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Frame = -3
Query: 718 WDYELEEMAELWARQCQKRHDECRNTIRFNALQNMDVRPVVPKVTEAQLLADAVGAWFSG 539
WD LE A+ ++ C H R I N PVV + T+A+LL +
Sbjct: 64 WDTTLETTAQDYSTGCPTGHSASRANIGENMY--WWTSPVVTQ-TDAELLGNR------S 114
Query: 538 SRVLQSEHVWSFRHGNCSAPGGCNSH-WYSTA-AWASTWRLGCSQALCTA 395
+ + +SE +GN NS ++T AWA+T ++GC + C++
Sbjct: 115 ANLWESEFQRFGWNGNLLTEELFNSGIGHATQMAWATTNKIGCGISKCSS 164
>Z82092-2|CAB05011.1| 212|Caenorhabditis elegans Hypothetical
protein ZK384.2 protein.
Length = 212
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRCGDRT 38
C Y GNI G PIY+ G +CS CP T+C R+
Sbjct: 175 CEYQSKGNIHGLPIYKEGPTCSACPASTKCERRS 208
>Z70308-5|CAA94348.1| 207|Caenorhabditis elegans Hypothetical
protein F49E11.9 protein.
Length = 207
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRCGDRTHRALC 23
C Y P GN G PIY+ G +CS+C T+C T LC
Sbjct: 170 CQYSPPGNTMGRPIYKEGTTCSSCSGSTKCD--TASGLC 206
>Z70308-6|CAA94344.1| 207|Caenorhabditis elegans Hypothetical
protein F49E11.10 protein.
Length = 207
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRCGDRTHRALC 23
C Y P GN IY +G +CS CP GT C T LC
Sbjct: 170 CQYKPQGNFINQYIYVSGATCSGCPSGTSC--ETSTGLC 206
>Z70307-4|CAA94330.1| 209|Caenorhabditis elegans Hypothetical
protein C39E9.4 protein.
Length = 209
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRCGDRTHRALCS 20
C+Y P G IY AG +CS CP GT C T LC+
Sbjct: 172 CHYKPLGRYVDQMIYTAGFTCSQCPTGTSCDQTT--GLCA 209
>Z70307-2|CAA94335.1| 208|Caenorhabditis elegans Hypothetical
protein C39E9.2 protein.
Length = 208
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRCGDRTHRALCS 20
C Y P GN IY +G +CS CP GT C T LC+
Sbjct: 171 CQYKPQGNYLNQNIYTSGTTCSKCPSGTSCEAAT--GLCA 208
>Z68108-4|CAA92136.1| 246|Caenorhabditis elegans Hypothetical
protein T05A10.5 protein.
Length = 246
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -3
Query: 163 PKIVAFTFCNYGPAGNIDGYPIYEAGLSC---SNCPQGTRCGDRTHRALCSI 17
PK+ ++ C+YGPAGN IYE G C +CP GT C T +LC I
Sbjct: 196 PKM-SYVVCHYGPAGNRKNNKIYEIGDPCEVDDDCPIGTDCEKTT--SLCVI 244
>Z73896-3|CAA98060.1| 208|Caenorhabditis elegans Hypothetical
protein F09E8.5 protein.
Length = 208
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRC 50
C+Y P GN IY +G +CS CP GT C
Sbjct: 171 CHYQPQGNYLNQNIYTSGTTCSKCPAGTSC 200
>Z70308-12|CAA94354.1| 211|Caenorhabditis elegans Hypothetical
protein F49E11.11 protein.
Length = 211
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 151 AFTFCNYGPAGNIDGYPIYEAGLSCSNCPQGTRC 50
A C Y GN G IY++G +CS CP GT C
Sbjct: 170 AVVVCQYKAQGNYLGQDIYKSGTTCSACPTGTTC 203
>Z70307-17|CAA94341.1| 211|Caenorhabditis elegans Hypothetical
protein F49E11.11 protein.
Length = 211
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 151 AFTFCNYGPAGNIDGYPIYEAGLSCSNCPQGTRC 50
A C Y GN G IY++G +CS CP GT C
Sbjct: 170 AVVVCQYKAQGNYLGQDIYKSGTTCSACPTGTTC 203
>Z70308-3|CAA94350.1| 207|Caenorhabditis elegans Hypothetical
protein F49E11.6 protein.
Length = 207
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRC 50
C Y GN PIY+ G +C+ CP GT C
Sbjct: 171 CQYKTPGNYLNQPIYQQGTTCAACPSGTAC 200
>U64848-6|AAB04885.1| 208|Caenorhabditis elegans Hypothetical
protein C50E3.10 protein.
Length = 208
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 148 FTFCNYGPA-GNIDGYPIYEAGLSCSNCPQGTRCGD 44
F C Y PA NID E +CSNCP GT C D
Sbjct: 162 FIICKYSPALKNIDDQLYEEGEEACSNCPSGTSCTD 197
>AC006655-3|AAF39874.1| 208|Caenorhabditis elegans Hypothetical
protein H10D18.2 protein.
Length = 208
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRC 50
C Y AGN+ IY++G +CS CP G++C
Sbjct: 171 CQYDQAGNMMDSDIYQSGDTCSFCPSGSKC 200
>Z70308-1|CAA94351.1| 213|Caenorhabditis elegans Hypothetical
protein F49E11.4 protein.
Length = 213
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 163 PKIVAFTFCNYGPAGNIDGYPIYEAGLSCSNCPQ 62
P+ C Y GNI+G PIY G +C+ CP+
Sbjct: 162 PEQTMVVVCRYFQKGNIEGEPIYNEGETCTKCPE 195
>AL032623-6|CAA21513.1| 198|Caenorhabditis elegans Hypothetical
protein Y43F8B.5 protein.
Length = 198
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRCGDRTHRALCS 20
C++ G I P+Y+ G +C CP GT+C + LCS
Sbjct: 161 CSFEKKGGITREPVYKKGKACEACPAGTKCASGS--VLCS 198
>AF016661-5|AAB66052.1| 207|Caenorhabditis elegans Hypothetical
protein F02E11.5 protein.
Length = 207
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRCGDRT 38
C Y GN+ IY AG +CS CP T+C T
Sbjct: 170 CQYSARGNMINNNIYTAGKTCSACPAKTKCEKAT 203
>Z92972-5|CAB07484.1| 212|Caenorhabditis elegans Hypothetical
protein T19C9.5 protein.
Length = 212
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 139 CNYGPA-GNIDGYPIYEAGLSCSNCPQGTRCG 47
C Y P NID +++ G CSNCP GT CG
Sbjct: 171 CKYSPPLENIDE-KLFDKGEPCSNCPSGTSCG 201
>Z70307-6|CAA94332.1| 210|Caenorhabditis elegans Hypothetical
protein C39E9.6 protein.
Length = 210
Score = 35.9 bits (79), Expect = 0.029
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRCGDRTHRALCS 20
C Y GN IY +G +CS CP GT C T LC+
Sbjct: 173 CQYRVRGNFFFKNIYNSGATCSACPAGTSCEQST--GLCA 210
>AL021566-5|CAA16500.1| 212|Caenorhabditis elegans Hypothetical
protein F08E10.7 protein.
Length = 212
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 139 CNYGPA-GNIDGYPIYEAGLSCSNCPQGTRCG 47
C Y P NID +++ G CSNCP GT CG
Sbjct: 171 CKYSPPLENIDEQ-LFDKGEPCSNCPSGTSCG 201
>AF067942-7|AAG45571.2| 200|Caenorhabditis elegans Hypothetical
protein ZK6.3 protein.
Length = 200
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -3
Query: 172 NDEPKIVAFTFCNYGPAGNIDGYPIYEAGLSCSNCPQGTRCGDRTH 35
ND+ + + C Y P N D +Y G CS CP GT C +
Sbjct: 150 NDQGYDMRYFICKYSPIDNGD---MYHVGEPCSQCPVGTSCNQNAN 192
>AC024805-13|AAK39335.1| 246|Caenorhabditis elegans Hypothetical
protein Y51H7C.2 protein.
Length = 246
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 154 VAFTFCNYGPAGNIDGYPIYEAGLSCSNCPQGTRCGDRT 38
+A C Y G +G +YE+G +CS CP T C T
Sbjct: 166 LAIVVCKYWGEGQGNGKIMYESGPTCSACPPNTTCDQAT 204
>Z73911-1|CAA98140.1| 262|Caenorhabditis elegans Hypothetical
protein T12A7.3 protein.
Length = 262
Score = 34.7 bits (76), Expect = 0.067
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -3
Query: 184 VRKANDEPKIVAFTFCNYGPAGNIDGYPIYEAGLSCSNCPQGTRCGDRT 38
+ K P C+Y P GN PIY G CS C + +C RT
Sbjct: 211 IHKRTGRPITKICVVCHYWPKGNYLNEPIYLEGPPCSKC-ESKKCDKRT 258
>Z70307-1|CAA94334.1| 205|Caenorhabditis elegans Hypothetical
protein C39E9.1 protein.
Length = 205
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 121 GNIDGYPIYEAGLSCSNCPQGTRCGDRTHRALC 23
GNI +Y+ G +CS CP GT C T LC
Sbjct: 174 GNIINQQVYQTGPTCSACPTGTTC--ETATGLC 204
>Z81527-1|CAB04269.3| 290|Caenorhabditis elegans Hypothetical
protein F35E12.1 protein.
Length = 290
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRC 50
C Y GNI IY G +CS CP +C
Sbjct: 253 CRYIEKGNIKDTNIYNEGKTCSACPSSAKC 282
>Z70307-5|CAA94331.1| 209|Caenorhabditis elegans Hypothetical
protein C39E9.5 protein.
Length = 209
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRC 50
C Y GN IY +G CS CP GT C
Sbjct: 172 CQYKVPGNYLFKNIYNSGAKCSACPAGTSC 201
>U42839-2|AAC69015.1| 425|Caenorhabditis elegans
Venom-allergen-like protein protein1, isoform a protein.
Length = 425
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -3
Query: 148 FTFCNYGPAGNIDGYPIYEAGLSC---SNCPQGTRCGDRTHRALCSI 17
++ C YGPAGN IY G C ++CP C ALC I
Sbjct: 380 YSVCQYGPAGNYMNQLIYTKGSPCTADADCPGTQTCS--VAEALCVI 424
>U42839-1|AAM54195.1| 424|Caenorhabditis elegans
Venom-allergen-like protein protein1, isoform b protein.
Length = 424
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -3
Query: 148 FTFCNYGPAGNIDGYPIYEAGLSC---SNCPQGTRCGDRTHRALCSI 17
++ C YGPAGN IY G C ++CP C ALC I
Sbjct: 379 YSVCQYGPAGNYMNQLIYTKGSPCTADADCPGTQTCS--VAEALCVI 423
>AF112356-1|AAD27559.1| 425|Caenorhabditis elegans venom
allergen-like protein protein.
Length = 425
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -3
Query: 148 FTFCNYGPAGNIDGYPIYEAGLSC---SNCPQGTRCGDRTHRALCSI 17
++ C YGPAGN IY G C ++CP C ALC I
Sbjct: 380 YSVCQYGPAGNYMNQLIYTKGSPCTADADCPGTQTCS--VAEALCVI 424
>AC006655-2|AAF39876.1| 208|Caenorhabditis elegans Hypothetical
protein H10D18.4 protein.
Length = 208
Score = 32.7 bits (71), Expect = 0.27
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -3
Query: 292 RYMTTATFPKFKDFATTVRVKTKESPLHRGILE--MTNVRK-ANDEPKIVAFTFCNYGPA 122
+Y T+TF FAT + T+ + + + N K AN + C Y A
Sbjct: 117 KYGWTSTFLDEAGFATGIGHATQMAWAETSKIGCGIKNCGKDANKKNMYKVAVVCQYDSA 176
Query: 121 GNIDGYPIYEAGLSCSNCPQGTRC 50
GN+ IY+ G +CS C + C
Sbjct: 177 GNMMDSDIYQQGETCSACSEDASC 200
>Z82092-1|CAB05010.1| 196|Caenorhabditis elegans Hypothetical
protein ZK384.1 protein.
Length = 196
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 139 CNYGPAGNIDGYPIYEAGLSCSNCPQGTRC 50
C Y GN+ G PIY+ G C+ CP C
Sbjct: 152 CMYYQQGNLVGRPIYKEGPPCTACPPMRIC 181
>AC024805-12|AAK39343.1| 557|Caenorhabditis elegans Hypothetical
protein Y51H7C.12 protein.
Length = 557
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 109 GYPIYEAGLSCSNCPQGTRCGDRT 38
G IYE+G +CS CP T C T
Sbjct: 101 GGTIYESGPTCSACPPNTTCDQAT 124
>Z68760-5|CAE17823.1| 161|Caenorhabditis elegans Hypothetical
protein F36H1.10 protein.
Length = 161
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 699 RWRNCGRVNVRNVTTNAGILLGLMHFKTWTCV 604
RW C +NVR T GI++GL W CV
Sbjct: 2 RWSLCCHINVRIAYTICGIIIGLF----WACV 29
>U28734-4|AAR30209.1| 477|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
c protein.
Length = 477
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 8 VSNDRAQSPVSPIPASRPLWAVTA*QT-GFVNRVPIDVPGRAVVT 139
V D +P + IPA+ WA+ T G+ + VP+ VPG+ + +
Sbjct: 402 VEKDEKDTPFTSIPAAF-WWAIVTMTTVGYGDYVPVTVPGKLIAS 445
>U28734-3|AAR25654.1| 495|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
b protein.
Length = 495
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 8 VSNDRAQSPVSPIPASRPLWAVTA*QT-GFVNRVPIDVPGRAVVT 139
V D +P + IPA+ WA+ T G+ + VP+ VPG+ + +
Sbjct: 407 VEKDEKDTPFTSIPAAF-WWAIVTMTTVGYGDYVPVTVPGKLIAS 450
>U28734-2|AAB52604.3| 490|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
a protein.
Length = 490
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 8 VSNDRAQSPVSPIPASRPLWAVTA*QT-GFVNRVPIDVPGRAVVT 139
V D +P + IPA+ WA+ T G+ + VP+ VPG+ + +
Sbjct: 402 VEKDEKDTPFTSIPAAF-WWAIVTMTTVGYGDYVPVTVPGKLIAS 445
>AY150829-1|AAN75511.1| 477|Caenorhabditis elegans KVS-2 protein.
Length = 477
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 8 VSNDRAQSPVSPIPASRPLWAVTA*QT-GFVNRVPIDVPGRAVVT 139
V D +P + IPA+ WA+ T G+ + VP+ VPG+ + +
Sbjct: 402 VEKDEKDTPFTSIPAAF-WWAIVTMTTVGYGDYVPVTVPGKLIAS 445
>AF541979-1|AAO65852.1| 490|Caenorhabditis elegans KVS-1 protein.
Length = 490
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 8 VSNDRAQSPVSPIPASRPLWAVTA*QT-GFVNRVPIDVPGRAVVT 139
V D +P + IPA+ WA+ T G+ + VP+ VPG+ + +
Sbjct: 402 VEKDEKDTPFTSIPAAF-WWAIVTMTTVGYGDYVPVTVPGKLIAS 445
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -3
Query: 502 RHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALCTATKKSCSRFRR 365
+H C P C Y+T A+ W G Q C K C+ + R
Sbjct: 529 KHCKCIQP--CQQDQYTTTYSAAKWPSGSIQTSCDNHSKDCNSYLR 572
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -3
Query: 502 RHGNCSAPGGCNSHWYSTAAWASTWRLGCSQALCTATKKSCSRFRR 365
+H C P C Y+T A+ W G Q C K C+ + R
Sbjct: 529 KHCKCIQP--CQQDQYTTTYSAAKWPSGSIQTSCDNHSKDCNSYLR 572
>AF100659-1|AAC68963.1| 232|Caenorhabditis elegans Hypothetical
protein F58E2.5 protein.
Length = 232
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 115 IDGY-PIYEAGLSCSNCPQGTRCGDRTHRALCS 20
+D Y P Y+ G +CS CP T C R LCS
Sbjct: 202 LDDYVPRYKEGKACSACPPPTSC--RGSSVLCS 232
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,390,057
Number of Sequences: 27780
Number of extensions: 382319
Number of successful extensions: 1259
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -