Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l04
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 66 4e-12
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 29 0.74
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 29 0.97
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 27 2.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.9
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 5.2
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 26 5.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.2
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 6.9
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 6.9
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 26 6.9
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 66.5 bits (155), Expect = 4e-12
Identities = 50/191 (26%), Positives = 88/191 (46%)
Frame = -2
Query: 764 IVCTTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVPIV 585
+V T P++ VP+ + L+ G + P+ + G + +RAS ++ + +P+V
Sbjct: 143 LVVTNPVNSTVPIFKKALERVGVHQPKHLFGVTTLDSVRASRFTSQVTNGKAELLHIPVV 202
Query: 584 GGTEGESLVPLFSKAVEYFDFAKHNALMMTDAVRGAQTAVTRTDGACVRAADLSEAHALS 405
GG G ++VPL S+ K +AL+ G + + A +A LS A+A +
Sbjct: 203 GGHSGATIVPLLSQGGVELTGEKRDALIHRIQFGGDEVVKAK---AGAGSATLSMAYAGA 259
Query: 404 GLVTKVAHALLCHDIPRVTGFVETDASQVISPARYIANTVVIGGSGVVKNLGLPKMTDWE 225
+ + V AL FVE+ + + A+ V +G GV + K+ D+E
Sbjct: 260 RMASSVLRALAGESGVEECTFVESPLYK-DQGIDFFASRVTLGKDGVDTIHPVGKINDYE 318
Query: 224 TTLVNFALIEL 192
+L+ AL EL
Sbjct: 319 ESLLKVALGEL 329
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 29.1 bits (62), Expect = 0.74
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Frame = +1
Query: 520 AKSKYSTAFENSGTSDSPSVPPTIGTLVYRGSR-----HRALAASVLARISGTAREPSTF 684
AKS S ++ G++D PS P I S R L+R++ T S
Sbjct: 203 AKSDDSPVVKSPGSNDKPSASPRISVRSLGNSSVVRPPTRTSTTRPLSRVNVTNASGSIS 262
Query: 685 RGSYQPVSFSVSAINGTIQSMGVVQTI 765
+ S P V+A ++ + QT+
Sbjct: 263 KNSTSPSKVKVNASTKIVRPVSAAQTV 289
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 28.7 bits (61), Expect = 0.97
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = -2
Query: 767 IIVCTTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVPI 588
++V T P+D L TLK TG+ R + + R L + L+P+ I
Sbjct: 132 LLVATNPVDV---LTYATLKLTGFPAERVIGSGTIIDTARFQYLIGKLYGLDPQSVNADI 188
Query: 587 VGGTEGESLVPLFSKA 540
+ G G+S + ++S A
Sbjct: 189 I-GEHGDSELAVWSHA 203
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.5 bits (58), Expect = 2.2
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 306 QIYSKYCSNWREWS 265
Q+Y+KYC WRE++
Sbjct: 675 QLYAKYCKAWREYN 688
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.9
Identities = 28/137 (20%), Positives = 61/137 (44%)
Frame = +1
Query: 166 SSTIFCFSSNSINAKLTSVVSQSVILGSPKFFTTPLPPITTVFAIYLAGEMT*LASVSTK 345
SST ++++ ++ +S+ SV S T ++ ++ A +T S+S+
Sbjct: 1025 SSTSSVATASATDSSTSSIAVASVTGSSTSSVATASATDSSTSSVATAS-IT--GSLSSS 1081
Query: 346 PVTLGMS*QRRACATFVTKPDSAWASLRSAALTQAPSVLVTAVWAPRTASVIIRALCLAK 525
T ++ + T V+ S + S A + +++ A +++V A +
Sbjct: 1082 IATASVTGSPTSSVTAVSSTSSVEGTASSTIAAAASAATLSSDAASGSSTVTSSATASSS 1141
Query: 526 SKYSTAFENSGTSDSPS 576
S +T ++S T+D+PS
Sbjct: 1142 SSAATTADSSVTTDTPS 1158
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.2 bits (55), Expect = 5.2
Identities = 28/122 (22%), Positives = 50/122 (40%)
Frame = +1
Query: 403 PDSAWASLRSAALTQAPSVLVTAVWAPRTASVIIRALCLAKSKYSTAFENSGTSDSPSVP 582
P + SL S+++ + S + T+ P TASV + L+ S T TS +P+
Sbjct: 73 PYTGSKSLSSSSIL-SNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSS 131
Query: 583 PTIGTLVYRGSRHRALAASVLARISGTAREPSTFRGSYQPVSFSVSAINGTIQSMGVVQT 762
+ S + + ISG+ + +TF V S+ + I + G + T
Sbjct: 132 SILSNSTIPSSSSISASTITTTIISGSTQFTTTF------VDQSIDTVEVVIPTAGYITT 185
Query: 763 IM 768
+
Sbjct: 186 TL 187
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 350 TGFVETDASQVISPARYIANTVVIGGSGVVKNLGLP 243
TG D S ++S R VV+ G+G+ + G+P
Sbjct: 40 TGNENVDLSPLVSAIRKAKRIVVVTGAGISCDAGIP 75
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -2
Query: 551 FSKAVEYFDFAKHNALMMTDAVRGAQTAVTRTDGACV 441
F+K++ +FD N++M +++R V +D A +
Sbjct: 1998 FTKSITHFDATDANSVMFANSLRTLSIVVGHSDSAWI 2034
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.9
Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +1
Query: 418 ASLRSAALTQAPSVLVTAVWAPRTASVIIRALCLAKSKY-STAFENSGTSDSPSVPPTIG 594
+SL+++A ++ P VL + +T + + K ++A ++ +D P+ P I
Sbjct: 163 SSLQTSASSRPP-VLSNGSFPRQTNTAPLNPPVHLKDNIRNSATPSTSQADIPTQYP-IN 220
Query: 595 TLVYRGSRHRALAASVLARISGTAREPSTFRGSYQPVSFSVSAINGTIQSM 747
+ + +++ A A+++GT E S + + VS + A+N +Q +
Sbjct: 221 STQKQQAKYEAEIEGYKAKLAGTYHEISVLQNTIVNVSGQLIAVNDQLQQL 271
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 163 QSSTIFCFSSNSINAKLTSVVSQSVILGSPKFFTTPLPPITTVFA 297
+ ++ S S N +L S+ SQ + +TTP+ P T F+
Sbjct: 121 RDDSLLALLSFSSNHRLHSMPSQLQPFNNASSYTTPMAPFTASFS 165
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 252 QIFHYSTPSNYYSICYISGRRNDLTGICFYKTSNSWDVVTEESMCDL 392
+IF YS+PS+ + + L I KT WD ++ +++ L
Sbjct: 224 EIFQYSSPSSSPINSVLFSKSGKLLFIAKDKTCEVWDSISSKTITSL 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,291,213
Number of Sequences: 5004
Number of extensions: 68470
Number of successful extensions: 223
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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