Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l04
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 78 9e-15
08_02_0774 - 21047696-21048889 77 2e-14
01_06_1220 + 35493575-35494765 75 6e-14
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 74 1e-13
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 67 2e-11
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 66 4e-11
07_03_1371 - 26100553-26101767 65 5e-11
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 35 0.063
01_01_0884 - 6956337-6956431,6956514-6957651 32 0.58
04_01_0014 - 231228-233179,233522-233714 31 1.3
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155 29 3.1
02_05_0431 + 28933418-28933951,28934066-28934213,28934729-28935030 29 3.1
01_04_0121 - 16307839-16308315,16308394-16308793,16308978-163094... 29 3.1
09_02_0573 - 10804171-10805096,10805188-10805377,10805920-108063... 29 5.4
10_08_0285 - 16493678-16493750,16493824-16494380,16494657-164947... 28 7.2
10_01_0214 - 2298914-2299342 28 9.5
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 28 9.5
05_03_0511 + 14907475-14907933,14907948-14908178,14908520-149088... 28 9.5
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 77.8 bits (183), Expect = 9e-15
Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 2/198 (1%)
Frame = -2
Query: 755 TTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVPIVGGT 576
+ P++ VP+ AE K+ G YDP+++LG + RA+T A L ++P+ VP+VGG
Sbjct: 159 SNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVARANTFVAEVLGIDPKDVNVPVVGGH 218
Query: 575 EGESLVPLFSKAVEYFDFAKHNALMMTDAVRGAQTAVTRTDGACVRAADLSEAHALSGLV 396
G +++PL S+ F +T ++ T V A +A LS A A
Sbjct: 219 AGVTILPLLSQVHPPCSFTPDEISYLTKRIQNGGTEVVEAK-AGAGSATLSMAFA----A 273
Query: 395 TKVAHALLCHDIPRVTGFVETD-ASQVISPARYIANTVVIGGSGVVKNLGLPKMTDWETT 219
K A L + G VE + ++ + A V +G +G + L L + D+E
Sbjct: 274 AKFGDACL-RAMRGDAGVVECSYVASAVTELPFFATKVRLGRAGAEEVLPLGPLNDFERA 332
Query: 218 LVNFALIELLEK-QKMVE 168
+ A EL+E QK ++
Sbjct: 333 GLEMAKKELMESIQKGID 350
>08_02_0774 - 21047696-21048889
Length = 397
Score = 77.0 bits (181), Expect = 2e-14
Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 3/196 (1%)
Frame = -2
Query: 770 FIIVCTTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVP 591
FI + + P++ VP+ AE LK+ G Y+P+K+ G + +RA+T A+ L+ VP
Sbjct: 187 FIHIISNPVNSTVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVP 246
Query: 590 IVGGTEGESLVPLFSKAVEYFDFAKHNALMMTDAVRGAQTAVTRTDGACVRAADLSEAHA 411
+VGG G +++PL SK + F +T ++ A T V A +A LS A+A
Sbjct: 247 VVGGHAGITILPLLSKTMPSVTFTDEETEQLTKRIQNAGTEVVEAK-AGAGSATLSMAYA 305
Query: 410 LSGLVTKVAHALLCH-DIPRVTGFVETDASQVISPARYIANTVVIGGSGV--VKNLGLPK 240
+ V AL D+ T FV+++ +++ + A+ V +G +GV + + L
Sbjct: 306 AARFVESSLRALAGDPDVYECT-FVQSELTEL----PFFASRVKLGKNGVESIISADLEG 360
Query: 239 MTDWETTLVNFALIEL 192
+T++E + EL
Sbjct: 361 VTEYEAKALEALKSEL 376
>01_06_1220 + 35493575-35494765
Length = 396
Score = 74.9 bits (176), Expect = 6e-14
Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 3/185 (1%)
Frame = -2
Query: 770 FIIVCTTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVP 591
FI + + P++ VP+ AE LK+ G Y+P+K+ G + +RA+T A+ L+ VP
Sbjct: 187 FIHIISNPVNSTVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFIAQKKNLKLIDVDVP 246
Query: 590 IVGGTEGESLVPLFSKAVEYFDFAKHNALMMTDAVRGAQTAVTRTDGACVRAADLSEAHA 411
+VGG G +++PL SK F +T ++ A T V A +A LS A+A
Sbjct: 247 VVGGHAGITILPLLSKTRPSVTFTNEETEELTRRIQNAGTEVVEAK-AGAGSATLSMAYA 305
Query: 410 LSGLVTKVAHALLCH-DIPRVTGFVETDASQVISPARYIANTVVIGGSGV--VKNLGLPK 240
+ V AL D+ T FV+++ ++++ + A+ V +G +GV + + L
Sbjct: 306 AARFVESSLRALAGDPDVYECT-FVQSELTELL----FFASRVKLGKNGVESIISSDLEG 360
Query: 239 MTDWE 225
+T++E
Sbjct: 361 VTEYE 365
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 73.7 bits (173), Expect = 1e-13
Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 2/194 (1%)
Frame = -2
Query: 761 VCTTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVPIVG 582
V + P++ VP+ AE K+ G YDP+++LG + +RA+T A L L+PR VP++G
Sbjct: 172 VISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIG 231
Query: 581 GTEGESLVPLFSKAVEYFDFAKHNALMMTDAVRGAQTAVTRTDGACVRAADLSEAHALSG 402
G G +++PL S+ F +T ++ T V EA+A S
Sbjct: 232 GHAGVTILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVV-------------EAYAAS- 277
Query: 401 LVTKVAHALLCHDIPRVTGFVETD--ASQVISPARYIANTVVIGGSGVVKNLGLPKMTDW 228
K A A L + G VE ASQV + + A+ V +G G+ + L L + ++
Sbjct: 278 ---KFADACL-RGLRGDAGIVECSFVASQV-TELPFFASKVRLGRCGIEEILSLGPLNEF 332
Query: 227 ETTLVNFALIELLE 186
E + A EL E
Sbjct: 333 ERAGLEKAKKELAE 346
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 66.9 bits (156), Expect = 2e-11
Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 3/180 (1%)
Frame = -2
Query: 755 TTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVPIVGGT 576
+ P++ VP+ AE K+ G YD +K+ G + +RA T A + VP+VGG
Sbjct: 143 SNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTEVNVPVVGGH 202
Query: 575 EGESLVPLFSKAVEYFDFAKHNAL-MMTDAVRGAQTAVTRTDGACVRAADLSEAHALSGL 399
G +++PLFS+A + H + +T + T V A +A LS A+A G
Sbjct: 203 AGITILPLFSQATPASNALSHEDIKALTKRTQDGGTEVVEAK-AGKGSATLSMAYA--GA 259
Query: 398 VTKVAHALLCHDIPRVT--GFVETDASQVISPARYIANTVVIGGSGVVKNLGLPKMTDWE 225
V A + +P V FV++ +++ + A+ V +G +GV + LGL +++++E
Sbjct: 260 VFADACLKGLNGVPDVVECSFVQSTVTEL----PFFASKVRLGKNGVEEVLGLGQLSEFE 315
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 65.7 bits (153), Expect = 4e-11
Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 3/180 (1%)
Frame = -2
Query: 755 TTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVPIVGGT 576
+ P++ VP+ AE K+ G YD +K+ G + +RA T A + VP+VGG
Sbjct: 144 SNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTDVNVPVVGGH 203
Query: 575 EGESLVPLFSKAVEYFD-FAKHNALMMTDAVRGAQTAVTRTDGACVRAADLSEAHALSGL 399
G +++PLFS+A + + + +T + T V A +A LS A+A G
Sbjct: 204 AGITILPLFSQATPATNALSDEDIKALTKRTQDGGTEVVEAK-AGKGSATLSMAYA--GA 260
Query: 398 VTKVAHALLCHDIPRVT--GFVETDASQVISPARYIANTVVIGGSGVVKNLGLPKMTDWE 225
V A + +P V FV++ +++ + A+ V +G +GV + LGL +++D+E
Sbjct: 261 VFANACLKGLNGVPDVVECSFVQSTVTEL----PFFASKVKLGKNGVEEVLGLGQLSDFE 316
>07_03_1371 - 26100553-26101767
Length = 404
Score = 65.3 bits (152), Expect = 5e-11
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Frame = -2
Query: 761 VCTTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVPIVG 582
V + P++ VP+ AE LK G YDPRK+ G + +RA+T A L VP+VG
Sbjct: 192 VISNPVNSTVPIAAEVLKRKGVYDPRKLFGVTTLDVVRANTFVAEMKGLPLADVDVPVVG 251
Query: 581 GTEGESLVPLFSKAVEYFDFAKHNALMMTDAVRGAQTAVTRTDG-ACVRAADLSEAHA 411
G +++PL SKA F +T ++ A T V A +A LS A+A
Sbjct: 252 GHAAATILPLLSKARPKTAFTDEEVEALTRRIQNAGTEVVEAKAKAGGGSATLSMAYA 309
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 35.1 bits (77), Expect = 0.063
Identities = 26/97 (26%), Positives = 40/97 (41%)
Frame = +1
Query: 400 KPDSAWASLRSAALTQAPSVLVTAVWAPRTASVIIRALCLAKSKYSTAFENSGTSDSPSV 579
K ++A R ALT APS++ +P T A A S A G ++SP+
Sbjct: 130 KANAAAVVARRQALTPAPSLVTHPPHSPSTPEKTQAATPSATQPPSPAVTEDGRTNSPAT 189
Query: 580 PPTIGTLVYRGSRHRALAASVLARISGTAREPSTFRG 690
P I + R +H +AS + ++P G
Sbjct: 190 PNRIIPVTPRPGKHSTSSASAPSPFPPQWQQPKQVEG 226
>01_01_0884 - 6956337-6956431,6956514-6957651
Length = 410
Score = 31.9 bits (69), Expect = 0.58
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Frame = +1
Query: 397 TKPDSAWASLRSAALTQAPSVLVTAVWAPR-TASVIIRALCLAKSKYSTAFENSGTSDSP 573
T+P +A A+ A P V+ V APR + ++ +C K +A + SP
Sbjct: 278 TQPPTAAAAAAVAPAPPQPVVVACGVRAPRASVPAGLKQVCKRLGKSRSASSAVAAAPSP 337
Query: 574 SVPPTIGTLVYRGSRH----RALAASVLARISGTAREPSTFRGSYQPVSFSVS 720
S+PP T + R L + + I+ R + +GS P+ S+S
Sbjct: 338 SLPPPPSTAGQQPQRRDDSLLQLQDGIQSAIAHCKRSFNASKGSESPLLRSMS 390
>04_01_0014 - 231228-233179,233522-233714
Length = 714
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 342 CRNRCQSSHFSCQIYSKYCSNWREWSSEKFGATQDDGLGNH 220
C C SS SC YS + W + F Q+DG+ NH
Sbjct: 294 CAQACLSS-CSCTAYSYQNNICSVWHGDLFSVNQNDGIENH 333
>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
Length = 220
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 379 ACATFVTKPDSAWASLRSAALTQAPSVLVTAVWAPRTASV-IIRALCLAKSKYSTA 543
AC + +P+ WA +R A ++VT A SV IR LA++ S A
Sbjct: 32 ACTYMIERPELRWAFIRKVYAIVATQLVVTVAIAAAVYSVPAIRRFFLARTPASLA 87
>02_05_0431 + 28933418-28933951,28934066-28934213,28934729-28935030
Length = 327
Score = 29.5 bits (63), Expect = 3.1
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Frame = -2
Query: 638 LAARALCLEPRYTRVP-------IVGGTEGESLVPLFSKAVE--YFDFAKHNALMMTDAV 486
LAA A PR R+P I GG+ G L + A E NA + +A
Sbjct: 18 LAALAFLARPRAARIPLKGRHVLITGGSSGIGLAMATAAAREGARVSILARNAARLEEA- 76
Query: 485 RGAQTAVTRTDGACVRAADLSEAHALS 405
RGA A T D V AAD+ +A A++
Sbjct: 77 RGAIRAATGRD-VGVHAADVRDADAVA 102
>01_04_0121 -
16307839-16308315,16308394-16308793,16308978-16309452,
16309936-16310353
Length = 589
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -2
Query: 698 WYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVPIVGGTEGESLVPL 552
W+ P L ++A PE+ L ARA + RY P+V EGE LV L
Sbjct: 146 WFGPTPRL-AIADPELIREVLLARADRFD-RYESHPMVRQLEGEGLVSL 192
>09_02_0573 - 10804171-10805096,10805188-10805377,10805920-10806363,
10806689-10807552,10809269-10809802
Length = 985
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 421 SLRSAALTQAPSVLVTAVWAPRTASVIIRALCLAKSKYSTAF 546
S RS A + P T W+P + ++R LC + +T F
Sbjct: 933 SNRSGAKNRLPLPPTTGHWSPNEPNTVLRVLCYRYDETATKF 974
>10_08_0285 -
16493678-16493750,16493824-16494380,16494657-16494798,
16495349-16495459,16495593-16496812
Length = 700
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -2
Query: 572 GESLVPLFSKAVEYFDFAKHNALMMTDAVRGAQT-AVTRTDGACVRAADLSEAHALSGLV 396
G + LF+ + F+ K+N D +T + D + +SE + SG+V
Sbjct: 573 GGFIYTLFTGGILAFELIKNNGSYYLDVPVFLRTWSKLIRDKNTICFTSVSEGKSSSGIV 632
Query: 395 TKVAHALLCHDIPRV 351
+AH C+ +P++
Sbjct: 633 FCLAHGYPCYGLPKI 647
>10_01_0214 - 2298914-2299342
Length = 142
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 390 GRTCSPLSRHPKSYWFCRNRC-QSSHFSCQIYS 295
G T SP + YW+C RC Q+S S ++S
Sbjct: 53 GETSSPAALDAVPYWYCGERCPQASLASRPLFS 85
>08_02_0546 - 18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 421 SLRSAALTQAPSVLVTAVWAPRTASVIIRALCLAKSKYSTAF 546
S S A + P V A W+P + I+R LC + +T F
Sbjct: 923 SCGSTAKSGFPMPPVPAHWSPSNPNTILRVLCYRNDEAATKF 964
>05_03_0511 +
14907475-14907933,14907948-14908178,14908520-14908855,
14909571-14910126,14910217-14910424,14910519-14910885,
14910988-14911110
Length = 759
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1
Query: 568 SPSVPPTIGTLVYRGSRHRALAASVLARISGTAREPSTFRGSYQPVSFSV 717
SP +P RG HR L R + TA PS+ S P S S+
Sbjct: 21 SPPLPRRADCRRGRGHGHRPRRGPPLLRAASTAAPPSSSPSSQSPGSLSI 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,440,454
Number of Sequences: 37544
Number of extensions: 453624
Number of successful extensions: 1305
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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