Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14l04
(771 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR536548-1|CAG38785.1| 338|Homo sapiens MDH2 protein. 97 5e-20
BC001917-1|AAH01917.1| 338|Homo sapiens malate dehydrogenase 2,... 97 5e-20
AF047470-1|AAC03787.1| 338|Homo sapiens malate dehydrogenase pr... 97 5e-20
AC005077-1|AAS07425.1| 316|Homo sapiens unknown protein. 97 5e-20
DQ402957-1|ABD77290.1| 305|Homo sapiens mitochondrial malate de... 95 3e-19
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein. 40 0.007
>CR536548-1|CAG38785.1| 338|Homo sapiens MDH2 protein.
Length = 338
Score = 97.5 bits (232), Expect = 5e-20
Identities = 57/202 (28%), Positives = 104/202 (51%)
Frame = -2
Query: 767 IIVCTTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVPI 588
I V P++ +P+ AE K+ G Y+P K+ G + +RA+T A L+P VP+
Sbjct: 137 ICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPV 196
Query: 587 VGGTEGESLVPLFSKAVEYFDFAKHNALMMTDAVRGAQTAVTRTDGACVRAADLSEAHAL 408
+GG G++++PL S+ DF + +T ++ A T V + A +A LS A+A
Sbjct: 197 IGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAK-AGAGSATLSMAYAG 255
Query: 407 SGLVTKVAHALLCHDIPRVTGFVETDASQVISPARYIANTVVIGGSGVVKNLGLPKMTDW 228
+ V + A+ + FV++ ++ Y + +++G G+ KNLG+ K++ +
Sbjct: 256 ARFVFSLVDAMNGKEGVVECSFVKSQETE----CTYFSTPLLLGKKGIEKNLGIGKVSSF 311
Query: 227 ETTLVNFALIELLEKQKMVEDW 162
E +++ A+ EL K ED+
Sbjct: 312 EEKMISDAIPELKASIKKGEDF 333
>BC001917-1|AAH01917.1| 338|Homo sapiens malate dehydrogenase 2,
NAD (mitochondrial) protein.
Length = 338
Score = 97.5 bits (232), Expect = 5e-20
Identities = 57/202 (28%), Positives = 104/202 (51%)
Frame = -2
Query: 767 IIVCTTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVPI 588
I V P++ +P+ AE K+ G Y+P K+ G + +RA+T A L+P VP+
Sbjct: 137 ICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPV 196
Query: 587 VGGTEGESLVPLFSKAVEYFDFAKHNALMMTDAVRGAQTAVTRTDGACVRAADLSEAHAL 408
+GG G++++PL S+ DF + +T ++ A T V + A +A LS A+A
Sbjct: 197 IGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAK-AGAGSATLSMAYAG 255
Query: 407 SGLVTKVAHALLCHDIPRVTGFVETDASQVISPARYIANTVVIGGSGVVKNLGLPKMTDW 228
+ V + A+ + FV++ ++ Y + +++G G+ KNLG+ K++ +
Sbjct: 256 ARFVFSLVDAMNGKEGVVECSFVKSQETE----CTYFSTPLLLGKKGIEKNLGIGKVSSF 311
Query: 227 ETTLVNFALIELLEKQKMVEDW 162
E +++ A+ EL K ED+
Sbjct: 312 EEKMISDAIPELKASIKKGEDF 333
>AF047470-1|AAC03787.1| 338|Homo sapiens malate dehydrogenase
precursor protein.
Length = 338
Score = 97.5 bits (232), Expect = 5e-20
Identities = 57/202 (28%), Positives = 104/202 (51%)
Frame = -2
Query: 767 IIVCTTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVPI 588
I V P++ +P+ AE K+ G Y+P K+ G + +RA+T A L+P VP+
Sbjct: 137 ICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPV 196
Query: 587 VGGTEGESLVPLFSKAVEYFDFAKHNALMMTDAVRGAQTAVTRTDGACVRAADLSEAHAL 408
+GG G++++PL S+ DF + +T ++ A T V + A +A LS A+A
Sbjct: 197 IGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAK-AGAGSATLSMAYAG 255
Query: 407 SGLVTKVAHALLCHDIPRVTGFVETDASQVISPARYIANTVVIGGSGVVKNLGLPKMTDW 228
+ V + A+ + FV++ ++ Y + +++G G+ KNLG+ K++ +
Sbjct: 256 ARFVFSLVDAMNGKEGVVECSFVKSQETE----CTYFSTPLLLGKKGIEKNLGIGKVSSF 311
Query: 227 ETTLVNFALIELLEKQKMVEDW 162
E +++ A+ EL K ED+
Sbjct: 312 EEKMISDAIPELKASIKKGEDF 333
>AC005077-1|AAS07425.1| 316|Homo sapiens unknown protein.
Length = 316
Score = 97.5 bits (232), Expect = 5e-20
Identities = 57/202 (28%), Positives = 104/202 (51%)
Frame = -2
Query: 767 IIVCTTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVPI 588
I V P++ +P+ AE K+ G Y+P K+ G + +RA+T A L+P VP+
Sbjct: 115 ICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPV 174
Query: 587 VGGTEGESLVPLFSKAVEYFDFAKHNALMMTDAVRGAQTAVTRTDGACVRAADLSEAHAL 408
+GG G++++PL S+ DF + +T ++ A T V + A +A LS A+A
Sbjct: 175 IGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAK-AGAGSATLSMAYAG 233
Query: 407 SGLVTKVAHALLCHDIPRVTGFVETDASQVISPARYIANTVVIGGSGVVKNLGLPKMTDW 228
+ V + A+ + FV++ ++ Y + +++G G+ KNLG+ K++ +
Sbjct: 234 ARFVFSLVDAMNGKEGVVECSFVKSQETE----CTYFSTPLLLGKKGIEKNLGIGKVSSF 289
Query: 227 ETTLVNFALIELLEKQKMVEDW 162
E +++ A+ EL K ED+
Sbjct: 290 EEKMISDAIPELKASIKKGEDF 311
>DQ402957-1|ABD77290.1| 305|Homo sapiens mitochondrial malate
dehydrogenase 2, NAD protein.
Length = 305
Score = 94.7 bits (225), Expect = 3e-19
Identities = 54/192 (28%), Positives = 100/192 (52%)
Frame = -2
Query: 767 IIVCTTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVPI 588
I V P++ +P+ AE K+ G Y+P K+ G + +RA+T A L+P VP+
Sbjct: 116 ICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPV 175
Query: 587 VGGTEGESLVPLFSKAVEYFDFAKHNALMMTDAVRGAQTAVTRTDGACVRAADLSEAHAL 408
+GG G++++PL S+ DF + +T ++ A T V + A +A LS A+A
Sbjct: 176 IGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAK-AGAGSATLSMAYAG 234
Query: 407 SGLVTKVAHALLCHDIPRVTGFVETDASQVISPARYIANTVVIGGSGVVKNLGLPKMTDW 228
+ V + A+ + FV++ ++ Y + +++G G+ KNLG+ K++ +
Sbjct: 235 ARFVFSLVDAMNGKEGVVECSFVKSQETE----CTYFSTPLLLGKKGIEKNLGIGKVSSF 290
Query: 227 ETTLVNFALIEL 192
E +++ A+ EL
Sbjct: 291 EEKMISDAIPEL 302
>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
Length = 1349
Score = 40.3 bits (90), Expect = 0.007
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 4/148 (2%)
Frame = +1
Query: 166 SSTIFCFSSNSINAKLTSVVS--QSVILGSPKFFTTPLPPITTVFAIYLAGEMT*LASVS 339
+ST +++I+A TS S Q+ + SP TTP P +T + + S +
Sbjct: 757 TSTTSAPITSTISAPTTSTTSTPQTSTISSPTTSTTPTPQTSTTSSPTTSTTSAPTTSTT 816
Query: 340 TKPVTLGMS*QRRACATFVTKPDSA--WASLRSAALTQAPSVLVTAVWAPRTASVIIRAL 513
+ P T S + + ++ T ++ AS SA T S T+ +P T+S
Sbjct: 817 SAPTTSTTSTPQTSISSAPTSSTTSAPTASTISAPTTSTTSFHTTSTTSPPTSSTSSTPQ 876
Query: 514 CLAKSKYSTAFENSGTSDSPSVPPTIGT 597
+K+ +T+ SG+ +PS PT T
Sbjct: 877 -TSKTSAATSSTTSGSGTTPSPVPTTST 903
Score = 30.3 bits (65), Expect = 8.0
Identities = 53/205 (25%), Positives = 79/205 (38%), Gaps = 7/205 (3%)
Frame = +1
Query: 166 SSTIFCFSSNSINAKLTSVVSQSV--ILGSPKFFTTPLPPITTVFAIYLAGEMT*LASVS 339
+ST +S++ + TS S S I P +P+P +T A + S
Sbjct: 10 TSTTSTPTSSTTSTPQTSTTSASTTSITSGPGTTPSPVPTTSTTSAPTTSTTSAATTSTI 69
Query: 340 TKPVTLGMS*QRRACATFVTKPDSAWASLRSAALTQAPSVL-VTAVWAPRTASVIIRALC 516
+ P T S A T T SA + +++ L PS + T+ +P T S
Sbjct: 70 SAPTTSTTS----APTTSTT---SASTASKTSGLGTTPSPIPTTSTTSPPTTST------ 116
Query: 517 LAKSKYSTAFENSGTSDSPSVPPTIGTLVYRGSRHRALAASVLARISGTAREPS----TF 684
+ STA + SG +PS PT T+ R +AS + G PS T
Sbjct: 117 ---TSASTASKTSGPGTTPSPVPTTSTIF--APRTSTTSASTTSTTPGPGTTPSPVPTTS 171
Query: 685 RGSYQPVSFSVSAINGTIQSMGVVQ 759
S S S +I+ T S V +
Sbjct: 172 TASVSKTSTSHVSISKTTHSQPVTR 196
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,337,160
Number of Sequences: 237096
Number of extensions: 2528551
Number of successful extensions: 5775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5762
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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