Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l04
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...    79   5e-15
Z82284-7|CAE11307.1|  343|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical p...    29   2.8  
AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical ...    29   2.8  
AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical...    29   3.7  
AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical...    29   3.7  
AC024763-6|AAO12403.1|  603|Caenorhabditis elegans Calpain famil...    29   3.7  
AC024763-5|AAO12402.1|  716|Caenorhabditis elegans Calpain famil...    29   3.7  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z66515-8|CAD59154.1|  488|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z66515-7|CAA91351.1|  460|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    28   8.5  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    28   8.5  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    28   8.5  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      28   8.5  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 53/192 (27%), Positives = 94/192 (48%)
 Frame = -2

Query: 767 IIVCTTPIDCMVPLIAETLKETGWYDPRKVLGSLAVPEMRASTLAARALCLEPRYTRVPI 588
           I + T P++  VP+ +E LK+ G YDP++V G   +  +R+    +     +   T VP+
Sbjct: 141 IAIITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVPV 200

Query: 587 VGGTEGESLVPLFSKAVEYFDFAKHNALMMTDAVRGAQTAVTRTDGACVRAADLSEAHAL 408
           VGG  G +++PL S+      F++     +T  ++ A T V     A   A   + + AL
Sbjct: 201 VGGHAGITIIPLLSQVKPSTKFSEEEISKLTPRIQDAGTEVV---NAKAGAGSATLSMAL 257

Query: 407 SGLVTKVAHALLCHDIPRVTGFVETDASQVISPARYIANTVVIGGSGVVKNLGLPKMTDW 228
           +G   + A+AL+              AS  +    Y +  V +G +GV K LG+ K++ +
Sbjct: 258 AG--ARFANALVRGIKGEKNVQCAYVASDAVKGVEYFSTPVELGPNGVEKILGVGKVSAY 315

Query: 227 ETTLVNFALIEL 192
           E  L++ ++ EL
Sbjct: 316 EQKLIDASVPEL 327


>Z82284-7|CAE11307.1|  343|Caenorhabditis elegans Hypothetical
           protein T27E7.8 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 430 SAALTQAPSVLVTAVWAPRTASVIIRALCLAKSKYST--AFENSGTSDSPSVPP 585
           S  +T A  V +  ++  R++S+     C+++ KY     F N G+S     PP
Sbjct: 114 SITITNAMLVSIIVLFENRSSSISFNKFCISRQKYKNFWIFSNCGSSFLVLTPP 167


>Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical
           protein Y102A5A.1 protein.
          Length = 1274

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 127 SSLQEELQYLKCQSSTIFCFSSNSINAKLT--SVVSQSVILGSPKFFTTPLPPITTV 291
           S L++ L  +    S I    + S   K+T  S +S ++ L +PK F   L P+TT+
Sbjct: 497 SGLEDSLDDIIPAVSNILTDKNASAQGKMTVLSFISNALTLNNPKRFKNLLSPLTTI 553


>AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical
           protein Y102A5A.1 protein.
          Length = 1274

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 127 SSLQEELQYLKCQSSTIFCFSSNSINAKLT--SVVSQSVILGSPKFFTTPLPPITTV 291
           S L++ L  +    S I    + S   K+T  S +S ++ L +PK F   L P+TT+
Sbjct: 497 SGLEDSLDDIIPAVSNILTDKNASAQGKMTVLSFISNALTLNNPKRFKNLLSPLTTI 553


>AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical
           protein Y105E8A.23b protein.
          Length = 1156

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -2

Query: 251 GLPKMTDWETTLVNFALIELLEKQKMVEDWHFKYCSSSCR----LDACQFQF 108
           GL K+   +T  +    +ELL ++K+VE  HF   S+  +    + A QFQF
Sbjct: 328 GLRKIDPNDTHPIVSTCLELLPREKLVETLHFSALSACSQGQNLIGASQFQF 379


>AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical
           protein Y105E8A.23a protein.
          Length = 1138

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -2

Query: 251 GLPKMTDWETTLVNFALIELLEKQKMVEDWHFKYCSSSCR----LDACQFQF 108
           GL K+   +T  +    +ELL ++K+VE  HF   S+  +    + A QFQF
Sbjct: 328 GLRKIDPNDTHPIVSTCLELLPREKLVETLHFSALSACSQGQNLIGASQFQF 379


>AC024763-6|AAO12403.1|  603|Caenorhabditis elegans Calpain family
           protein 4, isoform b protein.
          Length = 603

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -2

Query: 584 GGTEGESLVPLFSKAVEYFDFAK-HNALMMTDAVRGAQTAVTRTDGACVRA-ADLSEAHA 411
           GGT  E+L        EYFD  K   A ++   V+G +  +    G  + A A++ EA  
Sbjct: 387 GGTTAEALEDFTGGLTEYFDLRKSEKAAVLAALVKGME--MGSLFGCSIDADANIKEAQL 444

Query: 410 LSGLVTKVAHAL 375
            +GLV   A+++
Sbjct: 445 RNGLVCGHAYSI 456


>AC024763-5|AAO12402.1|  716|Caenorhabditis elegans Calpain family
           protein 4, isoform a protein.
          Length = 716

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -2

Query: 584 GGTEGESLVPLFSKAVEYFDFAK-HNALMMTDAVRGAQTAVTRTDGACVRA-ADLSEAHA 411
           GGT  E+L        EYFD  K   A ++   V+G +  +    G  + A A++ EA  
Sbjct: 387 GGTTAEALEDFTGGLTEYFDLRKSEKAAVLAALVKGME--MGSLFGCSIDADANIKEAQL 444

Query: 410 LSGLVTKVAHAL 375
            +GLV   A+++
Sbjct: 445 RNGLVCGHAYSI 456


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
            T01D3.7 protein.
          Length = 2882

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 26/82 (31%), Positives = 35/82 (42%)
 Frame = +1

Query: 145  LQYLKCQSSTIFCFSSNSINAKLTSVVSQSVILGSPKFFTTPLPPITTVFAIYLAGEMT* 324
            L  L   SS  +  +  SI A  TS V+  +   S  F T P  P TT   IY       
Sbjct: 2714 LPILTTTSSEYYTSTQESI-ASSTSEVTIILPTDSTTFLTPP--PSTTTELIYTVSSDGT 2770

Query: 325  LASVSTKPVTLGMS*QRRACAT 390
            L  +++ P T+G S +    AT
Sbjct: 2771 LEPITSAPTTIGSSSEGPTTAT 2792


>Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical
           protein F59F3.1 protein.
          Length = 1227

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 535 STAFENSGTSDSPSVPPTIGTLVYRGSRHRAL-AASVLARISGT 663
           S  FENS +SD  S+P T  T + + S+H  L    V    +GT
Sbjct: 604 SWRFENSKSSDISSIPTTTETEIKQYSKHLILNLRDVTTSFTGT 647


>Z66515-8|CAD59154.1|  488|Caenorhabditis elegans Hypothetical
           protein R53.7b protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
 Frame = -2

Query: 518 KHNALMMTDAVRGAQTAVTRTDGACVRAADLSEAHALSGLVTKVAHALLCHDI--PRVTG 345
           K N L +TD +   +      DG  +RA+D+   + L  +        LC ++   R+  
Sbjct: 222 KRNILTLTDCLNAIRNETPPADGQVLRASDILSGNQLVSVSISSKILDLCEELHQNRLHR 281

Query: 344 FVETDASQ----VISPARYIA-----NTVVIGGSGVVKNLGLPKMTDWETTLV 213
            V  D ++    +IS  R IA     N  +     + K++G+  +  WE   V
Sbjct: 282 VVVLDDAKEVVNIISVRRVIAAIHKQNRSLHFAQWLSKSIGMSAIGTWENVAV 334


>Z66515-7|CAA91351.1|  460|Caenorhabditis elegans Hypothetical
           protein R53.7a protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
 Frame = -2

Query: 518 KHNALMMTDAVRGAQTAVTRTDGACVRAADLSEAHALSGLVTKVAHALLCHDI--PRVTG 345
           K N L +TD +   +      DG  +RA+D+   + L  +        LC ++   R+  
Sbjct: 194 KRNILTLTDCLNAIRNETPPADGQVLRASDILSGNQLVSVSISSKILDLCEELHQNRLHR 253

Query: 344 FVETDASQ----VISPARYIA-----NTVVIGGSGVVKNLGLPKMTDWETTLV 213
            V  D ++    +IS  R IA     N  +     + K++G+  +  WE   V
Sbjct: 254 VVVLDDAKEVVNIISVRRVIAAIHKQNRSLHFAQWLSKSIGMSAIGTWENVAV 306


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
 Frame = -1

Query: 480 GPNCCYQDR--WSLC*SCRP*RGPCAIWFSNKGRTCS---PLSRHPKSYWFCRNRCQSSH 316
           GPNC  Q    W+    C P  G C       G+ CS   PL  +  +   C ++CQ + 
Sbjct: 422 GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPN---CAHQCQCNQ 478

Query: 315 --FSCQIYSKYCSNWREWSSEK 256
               C      C   R W+  +
Sbjct: 479 RGVGCDGADGKCQCDRGWTGHR 500


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
 Frame = -1

Query: 480 GPNCCYQDR--WSLC*SCRP*RGPCAIWFSNKGRTCS---PLSRHPKSYWFCRNRCQSSH 316
           GPNC  Q    W+    C P  G C       G+ CS   PL  +  +   C ++CQ + 
Sbjct: 422 GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPN---CAHQCQCNQ 478

Query: 315 --FSCQIYSKYCSNWREWSSEK 256
               C      C   R W+  +
Sbjct: 479 RGVGCDGADGKCQCDRGWTGHR 500


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
 Frame = -1

Query: 480 GPNCCYQDR--WSLC*SCRP*RGPCAIWFSNKGRTCS---PLSRHPKSYWFCRNRCQSSH 316
           GPNC  Q    W+    C P  G C       G+ CS   PL  +  +   C ++CQ + 
Sbjct: 422 GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPN---CAHQCQCNQ 478

Query: 315 --FSCQIYSKYCSNWREWSSEK 256
               C      C   R W+  +
Sbjct: 479 RGVGCDGADGKCQCDRGWTGHR 500


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
 Frame = -1

Query: 480 GPNCCYQDR--WSLC*SCRP*RGPCAIWFSNKGRTCS---PLSRHPKSYWFCRNRCQSSH 316
           GPNC  Q    W+    C P  G C       G+ CS   PL  +  +   C ++CQ + 
Sbjct: 422 GPNCEKQAMCDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPN---CAHQCQCNQ 478

Query: 315 --FSCQIYSKYCSNWREWSSEK 256
               C      C   R W+  +
Sbjct: 479 RGVGCDGADGKCQCDRGWTGHR 500


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,318,589
Number of Sequences: 27780
Number of extensions: 397337
Number of successful extensions: 1177
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)