Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l04
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.59 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.59 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   1.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   1.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   7.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 414 MGLAKVGSSNTSSIGPGNSSLGPSHSISHHKG 509
           +GL   GSS  S  G  NS      S SHH G
Sbjct: 376 LGLMPSGSSVHSDSGENNSRGHSGQSSSHHHG 407


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = +1

Query: 490 ASVIIRALCLAKSKYSTAFENSGTSDSPSVPPT-----IGTLVYRGSRHRALAASVLARI 654
           ASV+  A  L   K  T    +GTS + +  PT     +G+ V  G+   AL   + A  
Sbjct: 21  ASVVAGAASLTLVKAETPEHLAGTSTTAAATPTPPSVPVGSAV-AGTAGGALFPGMAAAG 79

Query: 655 SGTAREPSTFRGSYQPVSFSVSAI 726
            G AR       +  PV    +A+
Sbjct: 80  KGAARSDDWLANANSPVGSPSAAL 103


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 387 RTCSPLSRHPKSYWFCRNRCQSSHFSCQIYSKYCSNWRE 271
           RTCS      K   FC ++ Q S  S   +SK C   RE
Sbjct: 58  RTCSGDISVTKCEGFCNSQVQPSVASTTGFSKECYCCRE 96


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 387 RTCSPLSRHPKSYWFCRNRCQSSHFSCQIYSKYCSNWRE 271
           RTCS      K   FC ++ Q S  S   +SK C   RE
Sbjct: 58  RTCSGDISVTKCEGFCNSQVQPSVASTTGFSKECYCCRE 96


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 166 SSTIFCFSSNSINAKLTSVVSQSVILGSPKFFTTPLPPITTVF 294
           S  ++C   + +N  L        IL  P     P+PP+T VF
Sbjct: 111 SVAVYC--RDRLNPNLFIYALSVAILHRPDTKDLPVPPLTEVF 151


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 107 RIGTDRRPVYRKSC 148
           R+G+ RRP  R SC
Sbjct: 397 RVGSTRRPSRRNSC 410


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 665 PENRAPFEDHTNRFLSASLLS 727
           PE++ PF +H    + +S +S
Sbjct: 194 PEDKCPFTEHLGYLIFSSTIS 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,527
Number of Sequences: 438
Number of extensions: 4651
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)