Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14l03
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    27   1.6  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   2.7  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    26   2.7  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   2.7  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   4.8  
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    25   4.8  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   4.8  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   4.8  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    25   6.3  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   6.3  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    24   8.4  

>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = -1

Query: 357 RRPARRAKNISVQYKRREAAVQSPSR--TTIDRSYRSRRGSTVASSCHGYLSADLRARIR 184
           RRP R  K I +    + A +       + +       +   +AS  H Y+ ADL A +R
Sbjct: 433 RRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGADLAAVVR 492

Query: 183 *CVRAPIRS-QRAAALSQVTTG 121
               A +R+ +R  +L + T+G
Sbjct: 493 ---EAALRAIKRTISLQKDTSG 511


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = -1

Query: 387 RETMAREKTNRRPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASSCHGYLS 208
           R+  +R   +R P+ R+++    Y R        SR+   R Y  R  S+ +S  H Y  
Sbjct: 151 RDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSR--RRYEER--SSRSSRAHDYDY 206

Query: 207 ADLRARIR*CVRAPIRS---QRAAALSQ 133
            DLR   R   R   RS   +R++ LS+
Sbjct: 207 EDLRDDDRSHERKRSRSRPRERSSKLSE 234


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -1

Query: 396 PISRETMAREKTNRRPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASSC 223
           P+S    A + T RRP RR+++  ++    E  V+     T+D S  SR G  +   C
Sbjct: 200 PLSSTKHAPQSTERRPVRRSES-RLKQTNGEPLVK---HDTLDSSDISREGEQLYCYC 253


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = -1

Query: 402 NLPISRETMAREKTNRRPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASS 226
           N+P S         +R+P R ++  +    R+   + S  R T ++    ++ S +A S
Sbjct: 35  NIPRSSAKTKEHSADRKPHRNSEKKTQGMPRKNQQLASSERKTKNKKRLEKQSSAIADS 93


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 407 FTTCLYHARRWQERRQTEDQRGERRTSASSTKDEKRPY 294
           FT CLY   +W+++   E   G +    S+  DE   Y
Sbjct: 109 FTLCLYRKSKWKKQIVGEAYIGIQALLLSTNPDETCKY 146


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 383 RRWQERRQTEDQRGERRTSASSTKDEKRPYSHLP 282
           R+ + RR + DQRG +R S+  T  E  P++ +P
Sbjct: 60  RKGKGRRSSLDQRG-KRASSIGTGFEALPHADVP 92


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 278 VREGDCTAASRLLYWTLMFFARLAGLLFVFSLAIVSRDI 394
           + +G C+A    L    MFF  L G+ ++ SL I  RDI
Sbjct: 331 ITKGHCSA----LKADQMFFQLLDGVAYMHSLGIAHRDI 365


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -1

Query: 408 FYNLPISRETMAREKTNRRPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVAS 229
           +  LPI  E ++  KT  RP    +  S+++  +E   ++  R T + ++   R S VAS
Sbjct: 18  YERLPIDAEDLSSRKTYARPVLIRQYRSLRFANKE---ENICRLTPNSAFVPVRDSAVAS 74


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 320 WTLMFFARLAGLLFVFSLAIVS 385
           W L F A + GLLF +   ++S
Sbjct: 88  WVLAFAAGIGGLLFGYDTGVIS 109


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 388 TRDDGKREDKQKTSEASEEHQRPVQKTRSGRTVTFPD 278
           ++ +G  ED Q TS   EEH     KT+  +   F D
Sbjct: 165 SQPEGNLEDIQ-TSSQEEEHDNEKDKTKESKAKGFLD 200


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 238 STPPPRPIATVDSSPG 285
           S PPP PI  +DS+ G
Sbjct: 122 SAPPPPPILPIDSAGG 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,865
Number of Sequences: 5004
Number of extensions: 29667
Number of successful extensions: 110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)