Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k22
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    29   0.34 
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   3.2  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    25   3.2  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   5.5  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   5.5  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   5.5  
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    24   7.3  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    24   7.3  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    24   7.3  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    24   7.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   9.7  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    24   9.7  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    24   9.7  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    24   9.7  

>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -2

Query: 259 GELEADVGARFDQQLASIDPRLKIDMDPFAHRDLRPEMMFIREELRQAKM 110
           G+L+ D+   F  QL  I+  + +  +   HRDL+ E + + ++ RQ K+
Sbjct: 145 GKLDEDLARSFAMQL--INALVYLHKNFIVHRDLKIENVLLTQDSRQVKL 192


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 280 PEKMEEAGELEADVGARFDQQLAS 209
           P K E  G+L ++ GARF Q L S
Sbjct: 170 PLKTELYGQLNSECGARFPQTLKS 193


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 316 LKMSNAPDDENEPEKMEEAGELEADVGARFDQQ 218
           L+ S++P+ +N+P  MEE       +  R  QQ
Sbjct: 13  LRESSSPNSQNKPNAMEEIKRRRLQLEQRLAQQ 45


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 312  KCRTHQMMKMNPKKWKKQGNWKLMLALDLTNNS 214
            +C++H+M+ +NP   +  G +   ++  LTNN+
Sbjct: 1422 ECKSHEMLTINPPSGQTCGEY---MSAFLTNNT 1451


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = -2

Query: 298 PDDENEPEKMEEAGELEADVGARFDQQLASIDPRLKIDMDPFAHRDLRPEMMFI----RE 131
           PD++ E ++  +  + E  +  + +Q++++     KID D     D     MF+     E
Sbjct: 394 PDEDEESDQYSDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEE 453

Query: 130 ELRQ 119
           E+RQ
Sbjct: 454 EVRQ 457


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 73  VSSMQPDERPKFAFSPDVTPLV*TSFPVASLDAQTDPCRFSDEDLYSRVV 222
           +S  +P ++ K A  P    +   + PV       DP  F D+D + +VV
Sbjct: 304 ISDYRPPKKRKRAAWPPYKKVDRVNVPVVHDTTAFDPSTFDDDDGHYKVV 353


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 19  LNRYSS-IHSLLP*NL*GEVSSMQPDERPKFAFS 117
           L R+S+ +  +LP      +S ++PDERP  +++
Sbjct: 101 LQRHSNALVDILPPEADSSISMLRPDERPDVSYA 134


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 292 DENEPEKMEEAGELEADVGARFD 224
           D NE ++ EE   +E D+G  FD
Sbjct: 260 DNNESDQDEEDALIEEDLGNEFD 282


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 310 FSTATSTRPMKIYLPNFDYENQRF 381
           F   TS  P KI + +FD++  RF
Sbjct: 190 FYEVTSRYPQKITVVSFDFKRDRF 213


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 146 HFRSQVSMRKRIHVDFQT 199
           HF + VS+  R+H+DF T
Sbjct: 545 HFSTLVSLLIRLHLDFHT 562


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 140  KHHFRSQVSMRKRIHVDFQTRIYTREL 220
            K  ++ QV +R+R  + FQ+R +T  L
Sbjct: 1259 KWKYQKQVKLRRRHLIGFQSRQFTNVL 1285


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
 Frame = -2

Query: 310 MSNAPDDENEP--EKMEEA--------GELEADVGARFDQQLASID 203
           +++A DDE+E   E+MEEA         E E+DV   +D+   S D
Sbjct: 456 LTSALDDEDEEGDEEMEEALSEDEDFQAESESDVAEEYDENAESSD 501


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 267 KKQGNWKLMLALDLTNNSRV 208
           K+Q +  L+L L++TN SR+
Sbjct: 177 KRQSSVSLLLKLNITNRSRI 196


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 307 SNAPDDENEPEKMEEAGELEAD 242
           SN P  E +PEK  E  E  A+
Sbjct: 34  SNTPSTETQPEKKAEEPEAAAE 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,500,017
Number of Sequences: 5004
Number of extensions: 28203
Number of successful extensions: 113
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)