Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k22
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0020 + 143273-143592,144278-144371,144466-144537,144675-14...    29   1.0  
06_03_0697 - 23621808-23622127,23622194-23622932,23623298-236233...    28   3.1  
01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426...    28   3.1  
01_01_0022 - 170045-170095,170406-170554,170764-170875,171398-17...    27   4.1  
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     26   9.4  
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935...    26   9.4  
02_05_0603 - 30295130-30295389,30296840-30296987                       26   9.4  
01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296           26   9.4  

>05_01_0020 +
           143273-143592,144278-144371,144466-144537,144675-144786,
           145179-145327,145484-145510,145931-145981
          Length = 274

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 304 NAPDDENEPEKMEEAGELEADVGARFDQQLASIDPRLKIDMD 179
           N PDD +E E M E   LEAD+    +   + + P  + D+D
Sbjct: 187 NVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKESDLD 228


>06_03_0697 -
           23621808-23622127,23622194-23622932,23623298-23623327,
           23624183-23624200,23625176-23625268,23625665-23626123
          Length = 552

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 289 HHLVRSTFSTA-TSTRPMKIYLPNFDYENQRF 381
           H ++   FST+ T  RPM + LP+  Y N  F
Sbjct: 324 HPILDGNFSTSGTIQRPMNVELPSLQYPNYDF 355


>01_01_0574 +
           4263247-4263615,4263945-4263992,4264308-4264514,
           4264670-4264826,4264958-4265041,4265785-4265909,
           4268100-4268218,4268535-4268619,4269087-4269134
          Length = 413

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 179 SVCASRLATGNDVYTRGVTSGENANFG 99
           ++C  +  TG D+Y RG+  G + N G
Sbjct: 300 NICLGKHFTGADMYFRGIRCGNHVNSG 326


>01_01_0022 -
           170045-170095,170406-170554,170764-170875,171398-171469,
           171578-171671,171770-171921,172004-172072
          Length = 232

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 304 NAPDDENEPEKMEEAGELEADVGARFDQQLASIDPRLKIDMD 179
           N PDD +E E M E   LEAD+        + + P  + D D
Sbjct: 154 NIPDDVDEEELMGELDALEADMEFESSAVPSYLQPDKESDFD 195


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 283 EPEKMEEAGELEADVGARFDQQLAS 209
           +P   EEAGE+      R DQQLA+
Sbjct: 54  KPPPPEEAGEIHESFVMRLDQQLAA 78


>04_04_1228 +
           31888350-31892228,31892568-31893298,31893511-31893586,
           31894089-31894164,31894571-31894656,31895414-31895482,
           31895579-31895588,31895711-31896207
          Length = 1807

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 238 QHQLPIPLLLPFFRVHFHHLVRSTFSTATSTRPM 339
           Q QL    +     +  HH +RST S+  S RP+
Sbjct: 254 QLQLVCAKVTTILNLEIHHSIRSTDSSTASNRPI 287


>02_05_0603 - 30295130-30295389,30296840-30296987
          Length = 135

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 298 PDDE-NEPEKMEEAGELEADVGARFDQQLASIDPRLKIDMDPFA 170
           P+DE  E +KM E G L+ D       +   ++ + KIDM   A
Sbjct: 59  PNDELTEADKMGEEGNLQGDYDHLTPAERRYMEQKQKIDMHKLA 102


>01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296
          Length = 416

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -2

Query: 328 LKWLLKMSNAPDDENEPE---KMEEAGELEADVGARFDQQLASIDPRLKIDMD 179
           L WL  +SN+P  +  P+    +   G + A V        A   PR+K D D
Sbjct: 213 LPWLKTLSNSPSSKKHPQLPPLLIHGGSISAPVTPPLSSPTAR-TPRMKTDWD 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,479,454
Number of Sequences: 37544
Number of extensions: 176708
Number of successful extensions: 601
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)