Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k22
         (392 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119212-1|AAM51072.1|  429|Drosophila melanogaster SD15916p pro...    29   2.2  
AE014296-3745|AAF51885.1|  429|Drosophila melanogaster CG12768-P...    29   2.2  
AY061123-1|AAL28671.1|  611|Drosophila melanogaster LD10456p pro...    27   8.9  
AE014134-3589|AAF57260.3|  611|Drosophila melanogaster CG3278-PA...    27   8.9  

>AY119212-1|AAM51072.1|  429|Drosophila melanogaster SD15916p
           protein.
          Length = 429

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 215 REYRSSSENRHGSVCASRLATGNDVYTRGVTSGENANFGRSSGCIEE 75
           RE +S    +HGS+ ++ +ATG+        S  ++N   SS  ++E
Sbjct: 100 RERKSRERIKHGSLDSAPVATGSSNNNNNCVSRNSSNNNSSSAALDE 146


>AE014296-3745|AAF51885.1|  429|Drosophila melanogaster CG12768-PA
           protein.
          Length = 429

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 215 REYRSSSENRHGSVCASRLATGNDVYTRGVTSGENANFGRSSGCIEE 75
           RE +S    +HGS+ ++ +ATG+        S  ++N   SS  ++E
Sbjct: 100 RERKSRERIKHGSLDSAPVATGSSNNNNNCVSRNSSNNNSSSAALDE 146


>AY061123-1|AAL28671.1|  611|Drosophila melanogaster LD10456p
           protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 325 KWLLKMSNAPDDENEPEKMEEAGELEADVGARFDQQLASIDPR 197
           K LL   NAP DE E E  +E  ++EAD     D   A   P+
Sbjct: 233 KLLLLDVNAPKDEIELEMNDEEEKVEADTLFEIDDVCAENVPK 275


>AE014134-3589|AAF57260.3|  611|Drosophila melanogaster CG3278-PA,
           isoform A protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 325 KWLLKMSNAPDDENEPEKMEEAGELEADVGARFDQQLASIDPR 197
           K LL   NAP DE E E  +E  ++EAD     D   A   P+
Sbjct: 233 KLLLLDVNAPKDEIELEMNDEEEKVEADTLFEIDDVCAENVPK 275


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,078,787
Number of Sequences: 53049
Number of extensions: 302240
Number of successful extensions: 1094
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1107890535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)