Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k21
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    28   1.1  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   3.2  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    26   4.3  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   5.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   7.5  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   9.9  

>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/85 (24%), Positives = 36/85 (42%)
 Frame = -3

Query: 631  HFNNFPGKPRSCKILISGIRSTLS*APWTSKKTHTAVDLDSWQLFISLRNVIKLSAVLLP 452
            +F  F   PR   +L+       + A WTSK+ +   +    Q+ +  RN  K +A    
Sbjct: 1033 NFEKFCEVPREISLLLDDPTLFYNNAAWTSKELYKRCEEIISQMSLDERNTPKHTASTKR 1092

Query: 451  LRKPN*QGGGQYTHRMDTGPDTVDT 377
             R+P  +     T  + +G +  DT
Sbjct: 1093 KRQPIRRVTTNLTSDVPSGSEVADT 1117


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 346 FIRIFKVSLL*CRQYQDQCPFCVYIVHPLV 435
           F  I +++LL C+ + ++ PF   I+HPLV
Sbjct: 521 FFWIARMALL-CKYFSNELPFKEIILHPLV 549


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 51  MTHIKDILKQNLTLYLMDPLKLMQFNIQSINNKKWLL 161
           M  I D+L       L++P+ +   N+Q   N+K+LL
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYLL 239


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +3

Query: 42  AKTMTHIKDILKQNLTLYLM-DPLKLMQFNIQSI-NNKKWLLETILKDNSIDLCLLNETW 215
           A+ ++ I DI +    +Y+  + +K      +SI  +K+++ + +   +   L LL  TW
Sbjct: 461 AELLSSIVDICQPTEVVYMSREDMKSSHREKKSIYQHKEYMPDFLSSRDEFQLTLLESTW 520

Query: 216 LKKSSPSVN 242
                P+VN
Sbjct: 521 QYLPDPNVN 529


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 555 AYDNVDLIPLIKILHDLGL 611
           +YD+V + PLI +LH L L
Sbjct: 669 SYDHVPISPLIYLLHSLAL 687


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 937

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 19/70 (27%), Positives = 37/70 (52%)
 Frame = +3

Query: 33   SXSAKTMTHIKDILKQNLTLYLMDPLKLMQFNIQSINNKKWLLETILKDNSIDLCLLNET 212
            S +  + T++    K+N ++  + P      N+QS+++ K     +++D      +L E 
Sbjct: 840  SQTTSSFTNLTTESKRNASMLALPPESRYNQNMQSMSDSK---SVVIED-----YMLMEA 891

Query: 213  WLKKSSPSVN 242
             LKK+SPS+N
Sbjct: 892  -LKKNSPSLN 900


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,772
Number of Sequences: 5004
Number of extensions: 56617
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)