Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k21
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477...    45   5e-05
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    44   1e-04
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    43   2e-04
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911...    29   2.5  
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888...    29   3.3  

>07_03_1291 +
           25545749-25546262,25546989-25547669,25547693-25547751,
           25549152-25549242,25549330-25549743,25550191-25550243,
           25550947-25551177,25551492-25551708,25551790-25551890,
           25552446-25552532,25553536-25553676,25553839-25553961,
           25554070-25554522,25554931-25555308,25555410-25556060,
           25556264-25556368,25556482-25556707,25557204-25557241
          Length = 1520

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 24/69 (34%), Positives = 36/69 (52%)
 Frame = +3

Query: 435 QFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDLGLP 614
           Q GF KGR  +E+LI     +++C   K   + + LD   A+D+V+   L +IL   G P
Sbjct: 6   QTGFLKGRCISENLIYATELIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFP 65

Query: 615 GKLLKWIFN 641
              + WI N
Sbjct: 66  DNWISWIKN 74


>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 25/67 (37%), Positives = 34/67 (50%)
 Frame = +3

Query: 435  QFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDLGLP 614
            Q GF KGR  +E+LI     +++C   K   + V LD   A+D+V    L KIL   G P
Sbjct: 1021 QTGFLKGRCISENLIYATELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFP 1080

Query: 615  GKLLKWI 635
               + WI
Sbjct: 1081 ENWISWI 1087


>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/91 (23%), Positives = 45/91 (49%)
 Frame = +3

Query: 363 SIAIVVSTVSGPVSILCVYCPPPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFL 542
           S+ IV   ++G +  + +       +GF KG++  +        +  CQ SK   V + L
Sbjct: 397 SLKIVTKLLAGRLQGVILKLVSDNHYGFIKGKTIQDCPAWPFEYIHQCQQSKREIVLLKL 456

Query: 543 DVQGAYDNVDLIPLIKILHDLGLPGKLLKWI 635
           D + A+D ++   ++ ++  +G P K ++W+
Sbjct: 457 DFEKAFDTIEHSAILSVMQHMGFPLKWIEWV 487


>11_04_0442 - 17790811-17790889,17791047-17791114,17791144-17791166,
            17791210-17795913,17797414-17797624,17798478-17798666
          Length = 1757

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = +3

Query: 33   SXSAKTMTHIKDILKQNLTLYLMDPLKLMQFNIQSINNKKWLLETILKDNSIDLCLLNET 212
            S SA T  +I  +L     L    P+ +  FN   +  +KWL  +I      D  L NE 
Sbjct: 1101 SKSALTKANILALLASYRQLRTHSPMPVELFNC--MRTEKWLSTSIGSKAPKDAILFNEE 1158

Query: 213  WLKKSSPSVNI 245
            W +  SP  N+
Sbjct: 1159 W-QSLSPIANL 1168


>03_02_0495 -
           8879612-8880283,8880369-8880608,8880713-8880775,
           8881510-8881620
          Length = 361

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 75  KQNLTLYLMDPLKLMQFNIQSINNKKWLLETILKDNSIDLCLLNETWLKKSSPSVNITG 251
           K N  +YL++P  L +  ++  + +K +   I  DN +   +L   W+    P   ITG
Sbjct: 171 KINAGIYLLNPSVLDRIELKPTSIEKEVFPRIAADNGLFAMVLPGFWMDIGQPRDYITG 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,127,654
Number of Sequences: 37544
Number of extensions: 311973
Number of successful extensions: 751
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)