Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14k21
(669 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 59 6e-09
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 59 6e-09
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 58 8e-09
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 56 4e-08
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 51 2e-06
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 46 5e-05
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 45 8e-05
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 44 2e-04
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 43 3e-04
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 43 3e-04
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 43 3e-04
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 43 3e-04
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 39 0.005
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 39 0.005
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 36 0.050
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 36 0.066
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 33 0.46
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 33 0.46
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 33 0.46
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 33 0.46
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 32 0.61
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 31 1.4
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 30 2.5
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 30 2.5
BT011177-1|AAR88538.1| 85|Drosophila melanogaster RH16194p pro... 29 4.3
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 58.8 bits (136), Expect = 6e-09
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Frame = +3
Query: 99 MDPLKLMQFNIQSINNKKWLLETILKDNSIDLCLLNETWLKKSSPSVNITGYXYXG*NAQ 278
M L++ +N ++ L + + +ID+ LL+ET L + + +I GY + G N
Sbjct: 1 MASLRISLWNANGVSRHTQELTQFIYEKNIDVMLLSETHLTNKN-NFHIPGYLFYGTNHP 59
Query: 279 N--EHGGVGILIRNTLXFKTIKTAFYQDIQSIAIVVSTVSGPVSILCVYCPP 428
+ HGG GILIRN + + +QS +I + +G ++ VYCPP
Sbjct: 60 DGKAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIALQLNNGSTTLAAVYCPP 111
Score = 33.9 bits (74), Expect = 0.20
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLI-KILHD 602
P QFGFR+ T E + +++++ + +FLDV A+D V L L+ KI+
Sbjct: 541 PTHQFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKIIKL 600
Query: 603 LGL-PGKLLK-WIFN 641
L KLLK +++N
Sbjct: 601 LPQNTHKLLKSYLYN 615
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 58.8 bits (136), Expect = 6e-09
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Frame = +3
Query: 99 MDPLKLMQFNIQSINNKKWLLETILKDNSIDLCLLNETWLKKSSPSVNITGYXYXG*NAQ 278
M L++ +N ++ L + + +ID+ LL+ET L + + +I GY + G N
Sbjct: 1 MASLRISLWNANGVSRHTQELTQFIYEKNIDVMLLSETHLTNKN-NFHIPGYLFYGTNHP 59
Query: 279 N--EHGGVGILIRNTLXFKTIKTAFYQDIQSIAIVVSTVSGPVSILCVYCPP 428
+ HGG GILIRN + + +QS +I + +G ++ VYCPP
Sbjct: 60 DGKAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIALQLNNGSTTLAAVYCPP 111
Score = 33.9 bits (74), Expect = 0.20
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLI-KILHD 602
P QFGFR+ T E + +++++ + +FLDV A+D V L L+ KI+
Sbjct: 541 PTHQFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKIIKL 600
Query: 603 LGL-PGKLLK-WIFN 641
L KLLK +++N
Sbjct: 601 LPQNTHKLLKSYLYN 615
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 58.4 bits (135), Expect = 8e-09
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Frame = +3
Query: 99 MDPLKLMQFNIQSINNKKWLLETILKDNSIDLCLLNETWLKKS-SPSV-NITGYXYXG*N 272
M PL+++ +N ++ K +E ++ + ID+ LL+ET K + +P + Y +
Sbjct: 1 MMPLRILVWNADGVSTKLPEVECFVRRHEIDVLLLSETHCKGAETPKLFGFVAYTANDPS 60
Query: 273 AQNEHGGVGILIRNTLXFKTIKTAFYQDIQSIAIVVSTVSGPVSILCVYCPP 428
N GG ILI+N+L + +Q V+ T GP+S VYCPP
Sbjct: 61 GGNAKGGAAILIKNSLAHFPLTPIATAKVQLAPAVIETALGPISFGAVYCPP 112
Score = 37.5 bits (83), Expect = 0.016
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPL-IKILHD 602
P QFGFR G T E L + + + SK +FLD++ A+D V I L +KI
Sbjct: 545 PEHQFGFRAGHCTVEQLHRVVEQILTAYDSKEYCNSLFLDIREAFDRVWHIGLQLKIKQT 604
Query: 603 LGLP 614
L P
Sbjct: 605 LPAP 608
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 56.0 bits (129), Expect = 4e-08
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Frame = +3
Query: 99 MDPLKLMQFNIQSINNKKWLLETILKDNSIDLCLLNETWLKKSSPSVNITGY-XYXG*NA 275
+D L +M +N +++ NK+ L L++N I + L+NETWL S NI Y Y
Sbjct: 9 IDNLNIMAWNARAVRNKRIELIKFLENNHIHIALINETWLTHSD-RFNIPEYTIYRNDRK 67
Query: 276 QNEHGGVGILIRNTLXFKTIKTAFYQDIQSIAIVVSTVS-GPVSILCVY 419
++ GGV I + NTL + I I+++ I ++T S + I +Y
Sbjct: 68 ESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQINTDSNSSLKIYSIY 116
Score = 43.2 bits (97), Expect = 3e-04
Identities = 26/77 (33%), Positives = 39/77 (50%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P Q+GFR G +T + N +K SK + V LD++ A+D V L+ L +
Sbjct: 570 PTVQYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMI 629
Query: 606 GLPGKLLKWIFNFSSDR 656
G P L+K + NF + R
Sbjct: 630 GTPIYLIKIVQNFLTHR 646
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 50.8 bits (116), Expect = 2e-06
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Frame = +3
Query: 99 MDPLKLMQFNIQSINNKKWLLETILKDNSIDLCLLNETWLKKSSPSVNITGYXYXG*NAQ 278
M L++ +N ++ +K L L + ID+ LL+ET L S + I Y + G N
Sbjct: 1 MATLRIATWNANGVSQRKLELAQFLHEKHIDVMLLSETHLT-SKYNFQIRDYHFYGTNHP 59
Query: 279 N--EHGGVGILIRNTLXFKTIKTAFYQDIQSIAIVVSTVSGP-VSILCVYCPP 428
+ HGG ILIRN + K +Q+ +I + +++ VYCPP
Sbjct: 60 DGKAHGGTAILIRNRMKHHFYKEFAENHLQATSINIQLDDNTLLTLAAVYCPP 112
Score = 35.9 bits (79), Expect = 0.050
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLI-KILHD 602
P QFGFR+ T E + ++++ + VFLDV A+D V L L+ KI
Sbjct: 543 PAHQFGFRESHGTIEQVNRITTEIRTAFEYREYCTAVFLDVSQAFDKVWLDGLMFKI--K 600
Query: 603 LGLPGKLLKWIFNFSSDRTLYV 668
+ LP K + ++ DR V
Sbjct: 601 ISLPESTHKLLKSYLYDRKFAV 622
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 46.0 bits (104), Expect = 5e-05
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Frame = +3
Query: 102 DPLKLMQFNIQSINNKKWLLETILKDNSIDLCLLNETWLKKSSPSVNITGY-XYXG*N-A 275
D LK+ +N INNK L+ + + + ++ ET L +S + + GY Y N A
Sbjct: 20 DILKIAFWNAGGINNKIDELKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPA 79
Query: 276 QNEHGGVGILIRNTLXFKTIKTAFYQDIQSIAIVV----STVSGPVSILCVYCPP 428
++ GGV ++ ++L ++ + IQS IV+ + S + I VYCPP
Sbjct: 80 SSKRGGVATIVNSSLRHMALEPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPP 134
Score = 30.3 bits (65), Expect = 2.5
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P QFGFRK T + + + K VFLD+ A+D V L+ L +
Sbjct: 602 PLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI 661
Query: 606 GLPGKLLKWIFNFSSDRTLYV 668
LP L + ++ ++RT V
Sbjct: 662 -LPYNLYIILESYLTNRTFEV 681
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 45.2 bits (102), Expect = 8e-05
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Frame = +3
Query: 102 DPLKLMQFNIQSINNKKWLLETILKDNSIDLCLLNETWLKKSSPSVNITGY-XYXG*N-A 275
D LK+ +N INNK L+ + + + ++ ET L +S + + GY Y N
Sbjct: 8 DILKIAFWNAGGINNKIDELKLFILNIDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPV 67
Query: 276 QNEHGGVGILIRNTLXFKTIKTAFYQDIQSIAIVV----STVSGPVSILCVYCPP 428
++ GGV ++ +++ +K + IQS IV+ + S + I VYCPP
Sbjct: 68 SSKRGGVATIVNSSIRHMALKPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPP 122
Score = 28.7 bits (61), Expect = 7.6
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P QFGFRK + + + + K VFLD+ A+D V L+ L +
Sbjct: 590 PLHQFGFRKEHGSEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI 649
Query: 606 GLPGKLLKWIFNFSSDRTLYV 668
LP L + ++ ++RT V
Sbjct: 650 -LPYNLYIILESYLTNRTFEV 669
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/78 (34%), Positives = 46/78 (58%)
Frame = +3
Query: 435 QFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDLGLP 614
QFGF+KG+ST++ L+ +++ + SK V LD A+D V + +I+ L +
Sbjct: 543 QFGFKKGKSTSDCLL-YVDYL--ITKSKMHTSLVTLDFSRAFDRVGVHSIIQQLQEWKTG 599
Query: 615 GKLLKWIFNFSSDRTLYV 668
K++K+I NF S+R + V
Sbjct: 600 PKIIKYIKNFMSNRKITV 617
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 43.2 bits (97), Expect = 3e-04
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Frame = +3
Query: 102 DPLKLMQFNIQSINNKKWLLETILKDNSIDLCLLNETWLKKSSPSVNITGY-XYXG*N-A 275
D LK+ +N INNK L+ + + + ++ ET L S + + GY Y N
Sbjct: 8 DILKIAFWNAGGINNKIDELKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPV 67
Query: 276 QNEHGGVGILIRNTLXFKTIKTAFYQDIQSIAIVV----STVSGPVSILCVYCPP 428
++ GGV ++ +++ ++ + IQS IV+ + S + I VYCPP
Sbjct: 68 SSKRGGVATIVNSSIRHMALEPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPP 122
Score = 30.3 bits (65), Expect = 2.5
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P QFGFRK T + + + K VFLD+ A+D V L+ L +
Sbjct: 590 PLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI 649
Query: 606 GLPGKLLKWIFNFSSDRTLYV 668
LP L + ++ ++RT V
Sbjct: 650 -LPYNLYIILESYLTNRTFEV 669
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 43.2 bits (97), Expect = 3e-04
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Frame = +3
Query: 102 DPLKLMQFNIQSINNKKWLLETILKDNSIDLCLLNETWLKKSSPSVNITGY-XYXG*N-A 275
D LK+ +N INNK L+ + + + ++ ET L S + + GY Y N
Sbjct: 8 DILKIAFWNAGGINNKIDELKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPV 67
Query: 276 QNEHGGVGILIRNTLXFKTIKTAFYQDIQSIAIVV----STVSGPVSILCVYCPP 428
++ GGV ++ +++ ++ + IQS IV+ + S + I VYCPP
Sbjct: 68 SSKRGGVATIVNSSIRHMALEPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPP 122
Score = 30.3 bits (65), Expect = 2.5
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P QFGFRK T + + + K VFLD+ A+D V L+ L +
Sbjct: 590 PLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI 649
Query: 606 GLPGKLLKWIFNFSSDRTLYV 668
LP L + ++ ++RT V
Sbjct: 650 -LPYNLYIILESYLTNRTFEV 669
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 43.2 bits (97), Expect = 3e-04
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Frame = +3
Query: 102 DPLKLMQFNIQSINNKKWLLETILKDNSIDLCLLNETWLKKSSPSVNITGY-XYXG*N-A 275
D LK+ +N INNK L+ + + + ++ ET L S + + GY Y N
Sbjct: 8 DILKIAFWNAGGINNKIDELKLFILNIDAHIVIVTETRLDNKSTKLELPGYFTYLAQNPV 67
Query: 276 QNEHGGVGILIRNTLXFKTIKTAFYQDIQSIAIVV----STVSGPVSILCVYCPP 428
++ GGV ++ +++ ++ + IQS IV+ + S + I VYCPP
Sbjct: 68 SSKRGGVATIVNSSIRHMALEPIEKECIQSAPIVLLPENNRRSEMIVIASVYCPP 122
Score = 30.3 bits (65), Expect = 2.5
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P QFGFRK T + + + K VFLD+ A+D V L+ L +
Sbjct: 590 PLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI 649
Query: 606 GLPGKLLKWIFNFSSDRTLYV 668
LP L + ++ ++RT V
Sbjct: 650 -LPYNLYIILESYLTNRTFEV 669
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 43.2 bits (97), Expect = 3e-04
Identities = 26/77 (33%), Positives = 39/77 (50%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P Q+GFR G +T + N +K SK + V LD++ A+D V L+ L +
Sbjct: 518 PTVQYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMI 577
Query: 606 GLPGKLLKWIFNFSSDR 656
G P L+K + NF + R
Sbjct: 578 GTPIYLIKIVQNFLTHR 594
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 39.1 bits (87), Expect = 0.005
Identities = 28/81 (34%), Positives = 38/81 (46%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P QFGFR T E L +N +K AV FLD+Q A+D V L+ L
Sbjct: 547 PKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYKAKRL 606
Query: 606 GLPGKLLKWIFNFSSDRTLYV 668
P +L + +F +RT +V
Sbjct: 607 -FPPQLYLVVKSFLEERTFHV 626
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 39.1 bits (87), Expect = 0.005
Identities = 28/81 (34%), Positives = 38/81 (46%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P QFGFR T E L +N +K AV FLD+Q A+D V L+ L
Sbjct: 349 PKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYKAKRL 408
Query: 606 GLPGKLLKWIFNFSSDRTLYV 668
P +L + +F +RT +V
Sbjct: 409 -FPPQLYLVVKSFLEERTFHV 428
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 35.9 bits (79), Expect = 0.050
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Frame = +3
Query: 435 QFGFRKGRSTAESLITFLNDMKSCQ-----LSKSTAVC--VFLDVQGAYDNVDLIPLIKI 593
Q+GFRKG+ST ++L + + + L S C + LDV+ A++ ++
Sbjct: 514 QYGFRKGKSTLDALKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIILGA 573
Query: 594 LHDLGLPGKLLKWIFNFSSDRTLY 665
+ +LG+P + I N+ DR L+
Sbjct: 574 MRNLGVPDYIRGVIGNYFRDRVLW 597
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 35.5 bits (78), Expect = 0.066
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNV 569
P QFGFR+G ST E + + K VF+D+Q A+D V
Sbjct: 546 PDHQFGFRQGHSTVEQVHRLTKHILQAFDDKEYCNAVFIDMQQAFDRV 593
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 32.7 bits (71), Expect = 0.46
Identities = 25/81 (30%), Positives = 33/81 (40%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P QFGFRK L + K FLD+ A+D V L+ L L
Sbjct: 146 PSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSRL 205
Query: 606 GLPGKLLKWIFNFSSDRTLYV 668
+P L + N+ S+RT V
Sbjct: 206 -IPRYLFDLLENYLSNRTFSV 225
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.7 bits (71), Expect = 0.46
Identities = 25/81 (30%), Positives = 33/81 (40%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P QFGFRK L + K FLD+ A+D V L+ L L
Sbjct: 593 PSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSRL 652
Query: 606 GLPGKLLKWIFNFSSDRTLYV 668
+P L + N+ S+RT V
Sbjct: 653 -IPRYLFDLLENYLSNRTFSV 672
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.7 bits (71), Expect = 0.46
Identities = 25/81 (30%), Positives = 33/81 (40%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P QFGFRK L + K FLD+ A+D V L+ L L
Sbjct: 593 PSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSRL 652
Query: 606 GLPGKLLKWIFNFSSDRTLYV 668
+P L + N+ S+RT V
Sbjct: 653 -IPRYLFDLLENYLSNRTFSV 672
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.7 bits (71), Expect = 0.46
Identities = 25/81 (30%), Positives = 33/81 (40%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P QFGFRK L + K FLD+ A+D V L+ L L
Sbjct: 593 PSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSRL 652
Query: 606 GLPGKLLKWIFNFSSDRTLYV 668
+P L + N+ S+RT V
Sbjct: 653 -IPRYLFDLLENYLSNRTFSV 672
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 32.3 bits (70), Expect = 0.61
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 435 QFGFRKGRSTAESLITFLNDMKSCQLSKSTAVC-VFLDVQGAYDNVDLIPLIKILHDLG 608
QFGFR+GR ++ + + S S + V F+D +GA+DNV+ + L DLG
Sbjct: 544 QFGFRQGRCVEDA---WRHVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLG 599
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 31.1 bits (67), Expect = 1.4
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +3
Query: 108 LKLMQFNIQSINNKKWLLETILKDNSIDLCLLNETWLKKSSPSV----NITGYXYXG*NA 275
+ ++Q+NI I N L ++KD++ D+ L ET L +S + +GY +
Sbjct: 3 ITILQWNIHGIFNNYNELTLLIKDHAPDIVFLQETKLPCNSTNFICPKEYSGYFHNFSYN 62
Query: 276 QNEHGGVGILIRNTL 320
+ G+G+LI+ +
Sbjct: 63 TSAKQGIGVLIKRNV 77
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 30.3 bits (65), Expect = 2.5
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P QFGFRK T + + + K VFLD+ A+D V L+ L +
Sbjct: 474 PLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI 533
Query: 606 GLPGKLLKWIFNFSSDRTLYV 668
LP L + ++ ++RT V
Sbjct: 534 -LPYNLYIILESYLTNRTFEV 553
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 30.3 bits (65), Expect = 2.5
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +3
Query: 426 PPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTAVCVFLDVQGAYDNVDLIPLIKILHDL 605
P QFGFRK T + + + K VFLD+ A+D V L+ L +
Sbjct: 552 PLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKI 611
Query: 606 GLPGKLLKWIFNFSSDRTLYV 668
LP L + ++ ++RT V
Sbjct: 612 -LPYNLYIILESYLTNRTFEV 631
>BT011177-1|AAR88538.1| 85|Drosophila melanogaster RH16194p
protein.
Length = 85
Score = 29.5 bits (63), Expect = 4.3
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 288 GGVGILIRNTLXFKTIKTAFYQDIQSIAIVVSTVSGPVSILCVYCPPPCQF-GFRKGRST 464
GGV I +R+TL + + ++ + + + +S V I C Y PP +F ++ S
Sbjct: 15 GGVLIAVRSTLASEELLFDESRNSEFLCVKLSFSDRSVYITCSYIPPSSEFPEYQNHLSA 74
Query: 465 AESLITFLNDM 497
+S++ L+ +
Sbjct: 75 IQSILNKLSKL 85
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,758,846
Number of Sequences: 53049
Number of extensions: 550081
Number of successful extensions: 1107
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2889369000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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