Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k21
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    27   0.21 
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    27   0.21 
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    27   0.21 
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    27   0.21 
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    27   0.21 
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    27   0.21 
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    27   0.21 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   2.0  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.0  

>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 311 KYSSXQNYQNSILSGYSKYRYCSVDSI 391
           KYS+  NY N+  + Y K +Y ++ +I
Sbjct: 90  KYSNYNNYNNNYNTNYKKLQYYNIINI 116


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 311 KYSSXQNYQNSILSGYSKYRYCSVDSI 391
           KYS+  NY N+  + Y K +Y ++ +I
Sbjct: 90  KYSNYNNYNNNYNTNYKKLQYYNIINI 116


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 311 KYSSXQNYQNSILSGYSKYRYCSVDSI 391
           KYS+  NY N+  + Y K +Y ++ +I
Sbjct: 90  KYSNYNNYNNNYNTNYKKLQYYNIINI 116


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 311 KYSSXQNYQNSILSGYSKYRYCSVDSI 391
           KYS+  NY N+  + Y K +Y ++ +I
Sbjct: 90  KYSNYNNYNNNYNTNYKKLQYYNIINI 116


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 311 KYSSXQNYQNSILSGYSKYRYCSVDSI 391
           KYS+  NY N+  + Y K +Y ++ +I
Sbjct: 90  KYSNYNNYNNNYNTNYKKLQYYNIINI 116


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 311 KYSSXQNYQNSILSGYSKYRYCSVDSI 391
           KYS+  NY N+  + Y K +Y ++ +I
Sbjct: 90  KYSNYNNYNNNYNTNYKKLQYYNIINI 116


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 311 KYSSXQNYQNSILSGYSKYRYCSVDSI 391
           KYS+  NY N+  + Y K +Y ++ +I
Sbjct: 90  KYSNYNNYNNNYNTNYKKLQYYNIINI 116


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +3

Query: 405 ILCVYCPPPCQFGFRKGRSTAESLITFLNDMKSCQLSKSTA 527
           I C+ C P    G R    + E + T  + + +CQ     A
Sbjct: 11  ITCLICSPSVHCGTRPSFVSDEMIATAASVVNACQTQTGVA 51


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 311 KYSSXQNYQNSILSGYSKYRYCSVDSIRTSVHSVC 415
           KYS+  NY N     Y K    +++ I   V   C
Sbjct: 90  KYSNYNNYNNYNKKLYYKNYIINIEQIPVPVPIYC 124


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 311 KYSSXQNYQNSILSGYSKY 367
           KYS+  NY N   + Y+ Y
Sbjct: 323 KYSNYNNYNNYNNNNYNNY 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,538
Number of Sequences: 438
Number of extensions: 4402
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)