Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14k19
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 90 4e-19
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 55 1e-08
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 49 7e-07
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 47 3e-06
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 45 1e-05
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 44 2e-05
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 44 2e-05
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 43 4e-05
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 41 2e-04
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 41 2e-04
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 40 5e-04
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 38 0.002
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 32 0.11
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 0.11
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 29 0.57
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 28 1.7
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 2.3
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.3
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.3
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 27 4.0
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 5.3
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 26 5.3
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 26 5.3
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 26 7.0
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 26 7.0
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 9.2
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 25 9.2
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 9.2
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 89.8 bits (213), Expect = 4e-19
Identities = 67/214 (31%), Positives = 99/214 (46%), Gaps = 14/214 (6%)
Frame = -3
Query: 691 KSFLC--SKCGKTFHNSGCLRQHLLSHRDIAQFKCGF--CNKTYKSRQSLKEHFRVAHSS 524
K F C +CGK + L QHL +H + F C + C+K + + LK H R H+
Sbjct: 21 KIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKR-CHT- 78
Query: 523 NSKLFVCVT--CGKRFTAKSTLVMHMKSHTGVKQFACP--SCPKAYTRAIYLREH-SIVH 359
N K F C C +F + L H++ H K +AC C + +++ LR H S H
Sbjct: 79 NVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACH 138
Query: 358 TGQQRPKPFKCSNKDCERSFATKHSLLVHFAHTHTTERQHKC--TTC--FKGFATASGLK 191
T P+ C+ +DCE FATK L H H + C +C +GF S L+
Sbjct: 139 T---HLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQ 195
Query: 190 MHM-ESHATVELHCNICGKKLSNKRVLQKHIKTH 92
H+ E+H C+ICG++ L+ H+ H
Sbjct: 196 NHIREAHVP---SCSICGRQFKTAAHLRHHVVLH 226
Score = 74.9 bits (176), Expect = 1e-14
Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 18/226 (7%)
Frame = -3
Query: 721 RXHMTKHANVKSFLC--SKCGKTFHNSGCLRQHLLSHRDIAQFKCGF--CNKTYKSRQSL 554
+ H H NVK F C C F+ L +H+ HR + C + C++ + Q L
Sbjct: 71 KIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQL 130
Query: 553 KEHFRVAHSSNSKLFVCV--TCGKRFTAKSTLVMHM-KSHTGVKQFACP--SCP--KAYT 395
+ H H+ + + C C RF K L H+ ++H + ++CP SC + +
Sbjct: 131 RSHISACHT-HLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFE 189
Query: 394 RAIYLREHSIVHTGQQRPKPFKCSNKDCERSFATKHSLLVHFAHTHTTERQHK---CTT- 227
+ L+ H ++ P CS C R F T L H TT + K C
Sbjct: 190 KWSQLQNHI-----REAHVP-SCSI--CGRQFKTAAHLRHHVVLHQTTLEERKTYHCPME 241
Query: 226 -CFKGFATASGLKMHME--SHATVELHCNICGKKLSNKRVLQKHIK 98
C K F +S LK H+ + HC+ CG K K +LQ+H++
Sbjct: 242 GCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLE 287
Score = 70.5 bits (165), Expect = 2e-13
Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 16/221 (7%)
Frame = -3
Query: 715 HMTKHANVKSFLC--SKCGKTFHNSGCLRQHLLSHRDIAQFKCGF--CNKTYKSRQSLKE 548
H+ H+N + F+C + C K F+ L+ H H ++ F C + C+ + ++Q L+
Sbjct: 43 HLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLER 102
Query: 547 HFRVAHSSNSKLFVCVTCGKRFTAKSTLVMHMKS-HTGVKQFAC--PSCPKAYTRAIYLR 377
H V C + F+ L H+ + HT + + C C + L+
Sbjct: 103 HIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHTHLLPYPCTYQDCELRFATKQKLQ 162
Query: 376 EHSIVHTGQQRPKPFKCSNKDC--ERSFATKHSLLVHFAHTHTTERQHKCTTCFKGFATA 203
H V+ ++ + C ++ C F L H H C+ C + F TA
Sbjct: 163 NH--VNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREAHVP----SCSICGRQFKTA 216
Query: 202 SGLKMHMESHATV-----ELHCNI--CGKKLSNKRVLQKHI 101
+ L+ H+ H T HC + C K + L+KHI
Sbjct: 217 AHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHI 257
Score = 54.0 bits (124), Expect = 2e-08
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 11/189 (5%)
Frame = -3
Query: 706 KHANVKSFLCSKCGKTFHNSGCLRQHLLSHRDIAQ----FKCGF--CNKTYKSRQSLKEH 545
+ A+V S CS CG+ F + LR H++ H+ + + C C K++ +LK+H
Sbjct: 199 REAHVPS--CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKH 256
Query: 544 FRVAHSSNSKLFVCVTCGKRFTAKSTLVMHMKSHTGVKQFACPSCPKAYTRAIYLREHSI 365
V H N F C +CG +F K L H++ T C KA+ Y+ E I
Sbjct: 257 ISVIHEGNMA-FHCDSCGTKFGYKHMLQRHLERGT---------CKKAHKP--YINECGI 304
Query: 364 VHTGQQRPKPFKCSNKDCERSFAT---KHSLLVHFAHTHTTERQHKCT--TCFKGFATAS 200
H G + K+ + + K + H + R++ C+ C F
Sbjct: 305 KHDGIEGVAIHDQKEKELSSNLVSDVAKKIINEVTGHGYKEAREYSCSFPECNYRFKRLY 364
Query: 199 GLKMHMESH 173
+ H+ SH
Sbjct: 365 DMHRHLNSH 373
Score = 28.7 bits (61), Expect = 0.99
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -3
Query: 157 HCNI--CGKKLSNKRVLQKHIKTHN 89
HC CGKK S +L++H++TH+
Sbjct: 24 HCPYEECGKKYSRPSLLEQHLRTHS 48
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 54.8 bits (126), Expect = 1e-08
Identities = 27/78 (34%), Positives = 38/78 (48%)
Frame = -3
Query: 670 CGKTFHNSGCLRQHLLSHRDIAQFKCGFCNKTYKSRQSLKEHFRVAHSSNSKLFVCVTCG 491
C K F + L+ H+ +H + F+C C K++ +RQ K H + K F CVTC
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSF-ARQHDKRRHEQLH-TGIKAFACVTCN 634
Query: 490 KRFTAKSTLVMHMKSHTG 437
+RF L H KS G
Sbjct: 635 QRFARMDALNRHYKSEVG 652
Score = 52.8 bits (121), Expect = 5e-08
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = -3
Query: 535 AHSSNSKLFVCVT--CGKRFTAKSTLVMHMKSHTGVKQFACPSCPKAYTRAIYLREHSIV 362
+ S + +VC C KRFT L HM +HT + F C C K++ R R H +
Sbjct: 562 SESKSQGNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQL 621
Query: 361 HTGQQRPKPFKCSNKDCERSFATKHSLLVHF 269
HTG K F C C + FA +L H+
Sbjct: 622 HTG---IKAFACVT--CNQRFARMDALNRHY 647
Score = 52.4 bits (120), Expect = 7e-08
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = -3
Query: 601 FKCGF--CNKTYKSRQSLKEHFRVAHSSNSKLFVCVTCGKRFTAKSTLVMHMKSHTGVKQ 428
+ C F CNK + +LK H +N + F C C K F + H + HTG+K
Sbjct: 570 YVCTFAGCNKRFTRAYNLKSHMNT--HTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKA 627
Query: 427 FACPSCPKAYTRAIYLREHSIVHTGQ 350
FAC +C + + R L H GQ
Sbjct: 628 FACVTCNQRFARMDALNRHYKSEVGQ 653
Score = 50.8 bits (116), Expect = 2e-07
Identities = 29/79 (36%), Positives = 39/79 (49%)
Frame = -3
Query: 412 CPKAYTRAIYLREHSIVHTGQQRPKPFKCSNKDCERSFATKHSLLVHFAHTHTTERQHKC 233
C K +TRA L+ H HT +PF+CS C++SFA +H H HT + C
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNY---RPFQCSI--CKKSFARQHDKRRH-EQLHTGIKAFAC 630
Query: 232 TTCFKGFATASGLKMHMES 176
TC + FA L H +S
Sbjct: 631 VTCNQRFARMDALNRHYKS 649
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -3
Query: 721 RXHMTKHANVKSFLCSKCGKTFHNSGCLRQHLLSHRDIAQFKCGFCNKTYKSRQSLKEHF 542
+ HM H N + F CS C K+F R+H H I F C CN+ + +L H+
Sbjct: 588 KSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHY 647
Query: 541 R 539
+
Sbjct: 648 K 648
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -3
Query: 721 RXHMTKHANVKSFLCSKCGKTFHNSGCLRQHLLS 620
R H H +K+F C C + F L +H S
Sbjct: 616 RRHEQLHTGIKAFACVTCNQRFARMDALNRHYKS 649
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 49.2 bits (112), Expect = 7e-07
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -3
Query: 580 KTYKSRQSLKEHFRVAHSSNSKLFVCVTCGKRFTAKSTLVMHMKS-HTGVKQFACPSCPK 404
K K RQ V S K FVC C K+F L H++S HT K F C C K
Sbjct: 400 KRRKRRQPSNRKTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGK 458
Query: 403 AYTRAIYLREHSIVH 359
++R LR+H +H
Sbjct: 459 RFSRRDNLRQHERLH 473
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -3
Query: 691 KSFLCSKCGKTFHNSGCLRQHLLS-HRDIAQFKCGFCNKTYKSRQSLKEHFRVAHSSNSK 515
KSF+C +C K F S LR+H+ S H F C C K + R +L++H R+ H + S
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERL-HVNASP 478
Query: 514 LFVC 503
C
Sbjct: 479 RLAC 482
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 439 GVKQFACPSCPKAYTRAIYLREH-SIVHTGQQRPKPFKCSNKDCERSFATKHSLLVH 272
G K F CP C K + R+ +LR H +HT + KPF C C + F+ + +L H
Sbjct: 419 GGKSFVCPECSKKFKRSEHLRRHIRSLHTSE---KPFVCI---CGKRFSRRDNLRQH 469
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 47.2 bits (107), Expect = 3e-06
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Frame = -3
Query: 484 FTAKSTLVMHMKSHTGVKQFAC--PSCPKAYTRAIYLREHSIVHTGQQRPKPFKCSNKDC 311
FT K G +F C P CPK++TR +LR H H + K F CS C
Sbjct: 7 FTEKPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTH---ENVKAFSCS--FC 61
Query: 310 ERSFA-----TKHSLLVHFAHTHTTERQHKCTTCFKGF 212
R+FA +H +H + +ER+ +CF GF
Sbjct: 62 NRAFARSDVLNRHVQQMHLQKQNLSERRMLNASCFLGF 99
Score = 46.8 bits (106), Expect = 3e-06
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = -3
Query: 583 NKTYKSRQSLKEHFRVAHSSNSKLFVCV--TCGKRFTAKSTLVMHMKSHTGVKQFACPSC 410
N+ + + LK+ R AH F C C K FT K L H ++H VK F+C C
Sbjct: 3 NEESFTEKPLKKRSR-AHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFC 61
Query: 409 PKAYTRAIYLREH-SIVHTGQQRPKPFKCSNKDCERSF 299
+A+ R+ L H +H +Q + N C F
Sbjct: 62 NRAFARSDVLNRHVQQMHLQKQNLSERRMLNASCFLGF 99
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -3
Query: 685 FLCS--KCGKTFHNSGCLRQHLLSHRDIAQFKCGFCNKTYKSRQSLKEHFRVAHSSNSKL 512
F C+ C K+F LR+H +H ++ F C FCN+ + L H + H L
Sbjct: 26 FYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNL 85
Score = 35.5 bits (78), Expect = 0.009
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Frame = -3
Query: 721 RXHMTKHANVKSFLCSKCGKTFHNSGCLRQHL---------LSHRDIAQFKC--GFCNKT 575
R H H NVK+F CS C + F S L +H+ LS R + C GFC
Sbjct: 44 RRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLSERRMLNASCFLGFCVLA 103
Query: 574 YKSRQSLK-EHFRVAH 530
+ + HF + H
Sbjct: 104 HDYVNLINARHFMIEH 119
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/93 (24%), Positives = 41/93 (44%)
Frame = -3
Query: 364 VHTGQQRPKPFKCSNKDCERSFATKHSLLVHFAHTHTTERQHKCTTCFKGFATASGLKMH 185
++ G + + C C + A K+++ H TH ++R ++C C GF LK H
Sbjct: 433 LYCGPEADGKYVCLYNGCNKRIARKYNVESHI-QTHLSDRPYRCDLCKAGFVRHHDLKRH 491
Query: 184 MESHATVELHCNICGKKLSNKRVLQKHIKTHNV 86
+ H + C K+ + L +H K N+
Sbjct: 492 LRIHENGRPYVCECLKRFNRLDALNRH-KQRNI 523
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = -3
Query: 682 LCSKCGKTFHNSGCLRQHLLSHRDIAQFKCGFCNKTYKSRQSLKEHFRVAHSSNSKLFVC 503
L + C K + H+ +H ++C C + LK H R+ N + +VC
Sbjct: 446 LYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRI--HENGRPYVC 503
Query: 502 VTCGKRFTAKSTLVMH 455
C KRF L H
Sbjct: 504 -ECLKRFNRLDALNRH 518
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 44.4 bits (100), Expect = 2e-05
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Frame = -3
Query: 436 VKQFACPSCPKAYTRAIYLREHSIVHTGQQRPKPFKCSNKD-----CERSFATKHSLLVH 272
VKQ+ C +C +A+ R +L+ H HT + KPF CS D C R F+ + LL H
Sbjct: 67 VKQYVCETCTRAFARLEHLKRHIRSHTNE---KPFTCSEIDGLPTGCGRQFSRRDLLLRH 123
Query: 271 FAHTHTT---ERQHKCTT 227
H R+ + TT
Sbjct: 124 QQKIHRNPQPRRRRRSTT 141
Score = 35.9 bits (79), Expect = 0.007
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Frame = -3
Query: 517 KLFVCVTCGKRFTAKSTLVMHMKSHTGVKQFAC-------PSCPKAYTRA-IYLREHSIV 362
K +VC TC + F L H++SHT K F C C + ++R + LR +
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKI 127
Query: 361 HTGQQ 347
H Q
Sbjct: 128 HRNPQ 132
Score = 31.9 bits (69), Expect = 0.11
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Frame = -3
Query: 247 RQHKCTTCFKGFATASGLKMHMESHATVE-LHCNI-------CGKKLSNKRVLQKH 104
+Q+ C TC + FA LK H+ SH + C+ CG++ S + +L +H
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRH 123
Score = 30.3 bits (65), Expect = 0.32
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Frame = -3
Query: 694 VKSFLCSKCGKTFHNSGCLRQHLLSHRDIAQFKCG-------FCNKTYKSRQSLKEHFRV 536
VK ++C C + F L++H+ SH + F C C + + R L H +
Sbjct: 67 VKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQK 126
Query: 535 AH 530
H
Sbjct: 127 IH 128
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 44.0 bits (99), Expect = 2e-05
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -3
Query: 496 CGKRFTAKSTLVMHMKSHTGVKQFACPSCPKAYTRAIYLREH 371
C K FT K H +SHT K F CP C ++TR+ L H
Sbjct: 24 CTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRH 65
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = -3
Query: 604 QFKCGF--CNKTYKSRQSLKEHFRVAHSSNSKLFVCVTCGKRFTAKSTLVMHMKSHTGVK 431
++KC F C K++ ++ + HFR +H+ NSK F+C C FT L H+ + VK
Sbjct: 16 RYKCDFQGCTKSFTRKEHARRHFR-SHT-NSKAFICPHCSSSFTRSDVLNRHV-NQKHVK 72
Query: 430 Q 428
Q
Sbjct: 73 Q 73
Score = 33.9 bits (74), Expect = 0.026
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 721 RXHMTKHANVKSFLCSKCGKTFHNSGCLRQHL 626
R H H N K+F+C C +F S L +H+
Sbjct: 35 RRHFRSHTNSKAFICPHCSSSFTRSDVLNRHV 66
Score = 33.5 bits (73), Expect = 0.035
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -3
Query: 334 FKCSNKDCERSFATKHSLLVHFAHTHTTERQHKCTTCFKGFATASGLKMHM 182
+KC + C +SF K HF +HT + C C F + L H+
Sbjct: 17 YKCDFQGCTKSFTRKEHARRHF-RSHTNSKAFICPHCSSSFTRSDVLNRHV 66
Score = 30.3 bits (65), Expect = 0.32
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = -3
Query: 670 CGKTFHNSGCLRQHLLSHRDIAQFKCGFCNKTYKSRQSLKEHFRVAH 530
C K+F R+H SH + F C C+ ++ L H H
Sbjct: 24 CTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKH 70
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = -3
Query: 412 CPKAYTRAIYLREHSIVHTGQQRPKPFKCSNKDCERSFATKHSLLVHFAHTHTTE 248
C K++TR + R H HT K F C + C SF L H H +
Sbjct: 24 CTKSFTRKEHARRHFRSHTNS---KAFICPH--CSSSFTRSDVLNRHVNQKHVKQ 73
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = -3
Query: 436 VKQFACPSCPKAYTRAIYLREHSIVHTGQQRPKPFKCSNKDCERSFATKHSLLVHFAHTH 257
+K + CP C + + R + H HTG+ KPF+CS C++ F + L+ H TH
Sbjct: 1 MKSYECPFCKRVFHRQEHQVRHIRSHTGE---KPFECSYPSCKKRFTRRDELIRH-VRTH 56
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -3
Query: 517 KLFVCVTCGKRFTAKSTLVMHMKSHTGVKQFAC--PSCPKAYTRAIYLREHSIVH 359
K + C C + F + V H++SHTG K F C PSC K +TR L H H
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -3
Query: 694 VKSFLCSKCGKTFHNSGCLRQHLLSHRDIAQFKCGF--CNKTYKSRQSLKEHFR 539
+KS+ C C + FH +H+ SH F+C + C K + R L H R
Sbjct: 1 MKSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVR 54
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -3
Query: 247 RQHKCTTCFKGFATASGLKMHMESHATVE-LHCNI--CGKKLSNKRVLQKHIKTH 92
+ ++C C + F H+ SH + C+ C K+ + + L +H++TH
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -3
Query: 505 CVTCGKRFTAKSTLVMHMKSHTGVKQFAC--PSCPKAYTRAIYLREH 371
C G T++ LV H++SHTG K F C P C +++TR+ L +H
Sbjct: 80 CPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKH 126
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = -3
Query: 421 CPSCPKAYTRAIYLREHSIVHTGQQRPKPFKCSNKDCERSFATKHSLLVHFAHTHTTE 248
CP T L H HTG+ KPF CS +C+RSF +L H H +
Sbjct: 80 CPRKGMVQTSRFALVAHLRSHTGE---KPFICSVPECDRSFTRSDALAKHMRTVHEAD 134
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -3
Query: 679 CSKCGKTFHNSGCLRQHLLSHRDIAQFKCGF--CNKTYKSRQSLKEHFRVAHSSNS 518
C + G + L HL SH F C C++++ +L +H R H +++
Sbjct: 80 CPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVHEADT 135
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 511 FVCVTCGKRFTAKSTLVMHMKSHTGVKQFAC--PSCPKAYTRAIYLREHSIVHT 356
+ C C K F H+++HTG K C P C K ++R+ L H+ +HT
Sbjct: 26 YKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHT 79
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -3
Query: 451 KSHTGVKQFACPSCPKAYTRAIYLREHSIVHTGQQRPKPFKCSNKDCERSFATKHSLLVH 272
K+ + + CP C KA+ R + H HTG+ KP C+ C + F+ L H
Sbjct: 18 KNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGE---KPHVCTFPGCAKRFSRSDELTRH 74
Query: 271 F-AHTHTTERQH 239
HT+ R++
Sbjct: 75 ARIHTNANSRRN 86
Score = 37.9 bits (84), Expect = 0.002
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 2/108 (1%)
Frame = -3
Query: 343 PKPFKCSNKDCERSFATKHSLLVHFAHTHTTERQHKCT--TCFKGFATASGLKMHMESHA 170
P+P+KC C ++F H THT E+ H CT C K F+ + L H H
Sbjct: 23 PRPYKCPL--CTKAFYRLEHQTRHI-RTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHT 79
Query: 169 TVELHCNICGKKLSNKRVLQKHIKTHNVDANDMILETVVDNTFFEPSI 26
N +N + N++ + + N P++
Sbjct: 80 NANSRRNAAAAAAANNSARSSNSPAGNLEPSTNNAGVHMTNASMNPNV 127
Score = 33.1 bits (72), Expect = 0.046
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = -3
Query: 601 FKCGFCNKTYKSRQSLKEHFRVAHSSNSKLFVCVTCGKRFTAKSTLVMHMKSHT 440
+KC C K + + H R + C KRF+ L H + HT
Sbjct: 26 YKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHT 79
Score = 31.5 bits (68), Expect = 0.14
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = -3
Query: 691 KSFLCSKCGKTFHNSGCLRQHLLSHRDIAQFKCGF--CNKTYKSRQSLKEHFRVAHSSNS 518
+ + C C K F+ +H+ +H C F C K + L H R+ ++NS
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHTNANS 83
Query: 517 KLFVCVTCGKRFTAKST 467
+ +A+S+
Sbjct: 84 RRNAAAAAAANNSARSS 100
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 39.5 bits (88), Expect = 5e-04
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -3
Query: 568 SRQSLKEHFRVAHSSNSK--LFVCVTCGKRFTAKSTLVMHMKSHTGVKQFAC--PSCPKA 401
SR+ + H + +S++ + C C + F+ S+L +H SHTG + F C C KA
Sbjct: 447 SRKIAQSHTGSSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKA 506
Query: 400 YTRAIYLREHSIVH 359
+ +R H +H
Sbjct: 507 FNVRSNMRRHQRIH 520
Score = 38.7 bits (86), Expect = 0.001
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Frame = -3
Query: 322 NKDCERSFATKHSLLVHFAHTHTTER--------QHKCTTCFKGFATASGLKMHMESHAT 167
N D + +HS A +HT +++CT C +GF+ S LK+H SH
Sbjct: 433 NNDKRAHVSRRHSTSRKIAQSHTGSSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSHTG 492
Query: 166 VE-LHCNI--CGKKLSNKRVLQKHIKTHNV 86
C+ CGK + + +++H + H +
Sbjct: 493 ERPFVCDYAGCGKAFNVRSNMRRHQRIHGL 522
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -3
Query: 523 NSKLFVCVTCGKRFTAKSTLVMHMKSHTGVKQFACPSCPKAYTRAIYLREH 371
+ ++F C C KRFT L H H+ + CP C R L+ H
Sbjct: 27 SKRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRH 77
Score = 35.1 bits (77), Expect = 0.011
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = -3
Query: 685 FLCSKCGKTFHNSGCLRQHLLSHRDIAQFKCGFCNKTYKSRQSLKEHFRVAHSSNS 518
F C +C K F L +H H C +C K + LK H + H+ S
Sbjct: 31 FPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDKS 86
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = -3
Query: 427 FACPSCPKAYTRAIYLREHSIVHT-GQQRPKPF---KCSNKD 314
F C C K +TR L H H+ + P P+ KC KD
Sbjct: 31 FPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKD 72
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 19/80 (23%)
Frame = -3
Query: 340 KPFKCSNKDCERSFATKHSLLVHFAHTH----TT--------------ERQHKCTTCFKG 215
KP+KC +C++++ ++ L H H H TT + ++C C K
Sbjct: 348 KPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKR 407
Query: 214 FATASGLKMH-MESHATVEL 158
+ +GLK H SH V +
Sbjct: 408 YKNLNGLKYHRTHSHLQVSM 427
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 601 FKCGFCNKTYKSRQSLKEHFRVAH 530
++C C+K YK+ LK H +H
Sbjct: 399 YRCEVCSKRYKNLNGLKYHRTHSH 422
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.8 bits (54), Expect(2) = 0.11
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -3
Query: 511 FVCVTCGKRFTAKSTLVMHM--KSHTGV 434
F C+TC + F + + HM K HT +
Sbjct: 259 FTCLTCNREFKSLEAVRAHMQQKGHTSI 286
Score = 24.6 bits (51), Expect(2) = 0.11
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -3
Query: 595 CGFCNKTYKSRQSLKEHFRVAHS 527
C FC ++ S + K+H + +HS
Sbjct: 210 CLFCAASFSSFDTCKKHMKASHS 232
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 29.5 bits (63), Expect = 0.57
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = -3
Query: 586 CNKTYKSRQSLKEHFRVAHSSNSKLFVCVTCG--KRFTAKSTLVMHMKSHTG 437
CN + L H H+ +F C CG + F+ LV H++ G
Sbjct: 585 CNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDALVRHLRVKHG 636
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 130 TVSSRIYCNGAPQWHEIPYAFLSLRLLQNL*NKLCICAVSLSCECVQNA 276
T+S+ + N P+ HE+ + S + NL +K + A+S + V A
Sbjct: 744 TISNPFHANAPPEPHELKLQYHSFCFINNLFSKSSLKAISSNDSIVPKA 792
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 238 KCTTCFKGFATASGLKMHMESHATVELHCNICG-KKLSNKRVLQKHIK 98
K T F G SGL E A E+H NI G +S VLQK K
Sbjct: 601 KIRTGFSGRYLTSGLVNMAEKLANEEVHDNIIGMDSISALEVLQKRKK 648
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/49 (40%), Positives = 22/49 (44%)
Frame = -3
Query: 721 RXHMTKHANVKSFLCSKCGKTFHNSGCLRQHLLSHRDIAQFKCGFCNKT 575
R H K V+ C KCGK HN LR+ L R Q C FC T
Sbjct: 1792 RAHTGKACPVRLSTCYKCGKADHN---LRECKLRIR--FQGLCLFCGLT 1835
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/49 (40%), Positives = 22/49 (44%)
Frame = -3
Query: 721 RXHMTKHANVKSFLCSKCGKTFHNSGCLRQHLLSHRDIAQFKCGFCNKT 575
R H K V+ C KCGK HN LR+ L R Q C FC T
Sbjct: 1792 RAHTGKACPVRLSTCYKCGKADHN---LRECKLRIR--FQGLCLFCGLT 1835
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 26.6 bits (56), Expect = 4.0
Identities = 28/102 (27%), Positives = 34/102 (33%), Gaps = 4/102 (3%)
Frame = -3
Query: 667 GKTFHN-SGCLRQHLLSHRDIAQFKCGFCNKTY---KSRQSLKEHFRVAHSSNSKLFVCV 500
GK N + C H S D+ +CG C K Y + L H + CV
Sbjct: 14 GKLVDNETRCFHYH--SKADVVALRCGQCEKFYACFQCHDELNTHPFLPWRKAKFHIPCV 71
Query: 499 TCGKRFTAKSTLVMHMKSHTGVKQFACPSCPKAYTRAIYLRE 374
CG S V +S K P PK A Y E
Sbjct: 72 ICGA--CKNSLTVEEYRSTVHCKYCNHPFNPKCKNHAGYYFE 111
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 178 SHATVELHCNICGKKLSNKRVLQK 107
S T+ HCN C SN R+ +K
Sbjct: 1232 SEKTLVNHCNSCNSTTSNTRICEK 1255
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/74 (24%), Positives = 27/74 (36%)
Frame = -3
Query: 580 KTYKSRQSLKEHFRVAHSSNSKLFVCVTCGKRFTAKSTLVMHMKSHTGVKQFACPSCPKA 401
++Y LK + S+N K C C F V T ++ACPSC
Sbjct: 340 RSYHHLFPLKNWSEIPWSANPKSTHCFACQLPFPKPP--VSPFDESTSSMRYACPSCKNH 397
Query: 400 YTRAIYLREHSIVH 359
+ + H +H
Sbjct: 398 FCLDCDVFAHEQLH 411
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 688 SFLCSKCGKTFHNSGCLRQH 629
+ +CSKC TF++S L H
Sbjct: 174 NLICSKCNTTFNHSTALMMH 193
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 613 DIAQFKCGFCNKTYKSRQSLKEHFRVAHS 527
++ +F C FC+ T+ + L H + AH+
Sbjct: 54 EVHEFCCLFCDSTFTCLKDLWSHCKEAHN 82
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 541 RVAHSSNSKLFVCVTCGKRFTAKSTLVMHMKSHTGVKQFACPSC 410
R+ + +SK +VC C K+F++ L + T FAC C
Sbjct: 126 RMRNDFDSKGYVCPFCNKKFSSLDVLSLVTNEGT----FACNVC 165
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 9.2
Identities = 24/90 (26%), Positives = 35/90 (38%)
Frame = -3
Query: 370 SIVHTGQQRPKPFKCSNKDCERSFATKHSLLVHFAHTHTTERQHKCTTCFKGFATASGLK 191
S + TG++ P KC + CE + + KH H E Q + LK
Sbjct: 749 SNLETGRKWLWPIKCLGRFCEATCSNKH------IHPSEFEGQKNLWQVILPNVVPNLLK 802
Query: 190 MHMESHATVELHCNICGKKLSNKRVLQKHI 101
+ + H E I G + N +LQK I
Sbjct: 803 LVEQLHCCYE-PSFISGLGMHNSSILQKSI 831
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 9.2
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = -3
Query: 586 CNKTYKSRQSLKEHFRVAHSSNSKLFVCVTCGKR-FTAKSTLVMHMKSHTGVKQFACPSC 410
C+ ++Q+LK R +S SK + KR + LV H +F C C
Sbjct: 367 CDARIAAKQALKGK-RQYDTSTSKAELSTPPSKRRHIDDADLVFHSSPLLSRSRFICCYC 425
Query: 409 PKAYTRAIYLREH 371
K + L+EH
Sbjct: 426 TKPFLSISKLQEH 438
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -3
Query: 139 KKLSNKRVLQKHIKTHNVDANDMILETVVDNTFF 38
KK+S K +++K TH + ++++ T +D + F
Sbjct: 331 KKISKKLIVRKKEVTHTLGERNILVRTSLDESPF 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,316,242
Number of Sequences: 5004
Number of extensions: 71815
Number of successful extensions: 273
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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