Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k18
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...   184   1e-47
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.73 
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.7  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.9  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    26   5.1  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   9.0  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score =  184 bits (448), Expect = 1e-47
 Identities = 87/165 (52%), Positives = 120/165 (72%)
 Frame = -2

Query: 673 DPFDTEAQRMIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAFIDSGA 494
           D FD E QR I E+IRQ  +  NM++A+E +PE FG V ML++N  +NG  VKAF+DSGA
Sbjct: 71  DLFDVEVQRRIEEQIRQNAVTENMQSAIENHPEVFGQVYMLFVNVEINGHKVKAFVDSGA 130

Query: 493 QTTIMSAACAERCNIMRLVDTRWAGIAKGVGVQRIIGRIHMVQMRIEQDFLTTSFSVLEE 314
           Q TI+SA CAE+C + RL+DTR+ G+AKGVG+ +I+G +H   ++I   +L   F+V+E 
Sbjct: 131 QATILSADCAEKCGLTRLLDTRFQGVAKGVGMAKILGCVHSAPLKIGDLYLPCRFTVIEG 190

Query: 313 QPMDMLLGLDMLKRHQCNIDLKRGVLRIGTTGTETPFLPESDLPE 179
           + +DMLLGLDML+R+Q  IDL+  VLRI   G E PFL ES++P+
Sbjct: 191 RDVDMLLGLDMLRRYQACIDLENNVLRI--HGKEIPFLGESEIPK 233


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 75  PCLDLSRASRICLSSWSLTDWFTMSSS-ETPDRRAHSGR 188
           P +DLS A R C  SW+  D F ++S+     R  HS R
Sbjct: 539 PTVDLSPAQRGCQDSWNYLDHFDIASAHRNVYRNIHSIR 577


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +3

Query: 423 AHLVSTKRIMLHLSAHAADIIVVWAPESMNAFTGNPLT*QLIYNITTVPKVSGLYSIAAS 602
           A L+S     LH   H    IVV    S++   G+ +    IYNITTV  +S    +AA 
Sbjct: 425 APLISLSSKQLHPRHHNTASIVVQVGVSLSNTFGS-ICGGAIYNITTVGFISLCLGLAAV 483

Query: 603 MLASIFF 623
           +   + F
Sbjct: 484 VYMQLIF 490


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 33/125 (26%), Positives = 51/125 (40%)
 Frame = +3

Query: 90  SRASRICLSSWSLTDWFTMSSSETPDRRAHSGRSDSGRNGVSVPVVPIRRTPRLRSMLH* 269
           S +S    SS S +   + SSS +    + S  S S  +  SVP+     +    S    
Sbjct: 166 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSS---- 221

Query: 270 CRLSISRPSSISMGCSSSTENEVVKKSCSILICTM*MRPMILCTPTPLAIPAHLVSTKRI 449
              S S  SS S    SS+ + +   S S  I T+ + P    + T   +P+   ST  +
Sbjct: 222 ---SSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPS---STAAL 275

Query: 450 MLHLS 464
            L+ S
Sbjct: 276 ALNAS 280


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 622 KNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAFIDSGAQ 491
           K I++     +EY P+TF T   LY N + N F +     S AQ
Sbjct: 92  KGIQSKWYGYIEYLPKTFNT--PLYFNENDNAFLISTNAYSAAQ 133


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 350 LFDSHLHHVNATDDPLYANTF 412
           L DSH HH+NA++    + +F
Sbjct: 490 LLDSHAHHLNASEGSKSSGSF 510


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 279 LNGI-SATSTSNVVFYGSARPVPRRRSCQ-NLIF-QNAPVC 166
           LNG  +  S+S+   YGS    P  RSC  N++F ++  VC
Sbjct: 290 LNGPPNQESSSSASSYGSRTQTPNARSCSLNIVFHKHKKVC 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,327
Number of Sequences: 5004
Number of extensions: 67926
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)