Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k18
         (764 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT006019-1|AAO74702.1|  458|Drosophila melanogaster GM04721p pro...   317   9e-87
AY075184-1|AAL68054.1|  458|Drosophila melanogaster AT13091p pro...   317   9e-87
AE014298-2408|AAF48614.1|  458|Drosophila melanogaster CG4420-PA...   317   9e-87
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    34   0.25 
AE014134-3185|AAF53863.1|  470|Drosophila melanogaster CG13966-P...    31   2.3  
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc...    30   3.0  
AY058604-1|AAL13833.1|  585|Drosophila melanogaster LD29806p pro...    29   7.0  
AE014298-1473|AAF46608.1| 2090|Drosophila melanogaster CG9817-PA...    29   7.0  
AE014134-2996|AAF53723.2|  585|Drosophila melanogaster CG10428-P...    29   7.0  
AE014297-1245|AAF54593.2|  487|Drosophila melanogaster CG17200-P...    29   9.2  

>BT006019-1|AAO74702.1|  458|Drosophila melanogaster GM04721p
           protein.
          Length = 458

 Score =  317 bits (779), Expect = 9e-87
 Identities = 148/223 (66%), Positives = 180/223 (80%)
 Frame = -2

Query: 763 GSLDTFAAVLREQIXARTERQQQRIRMMNSDPFDTEAQRMIAEEIRQKNIEANMEAAMEY 584
           G  + FA +LRE I  R  R + R+RM+N+DPFD E QR+IAEEI+QKNI+ NM AA+EY
Sbjct: 171 GDKEKFARLLREHITERKRRNEHRMRMLNADPFDEETQRLIAEEIKQKNIQDNMAAAIEY 230

Query: 583 NPETFGTVVMLYINCHVNGFPVKAFIDSGAQTTIMSAACAERCNIMRLVDTRWAGIAKGV 404
           NPE FGTV MLYINC VNG PVKAF+DSGAQTTIMS  CAERC++ RL+DTRW G+AKGV
Sbjct: 231 NPEIFGTVTMLYINCKVNGIPVKAFVDSGAQTTIMSKDCAERCHVNRLIDTRWNGVAKGV 290

Query: 403 GVQRIIGRIHMVQMRIEQDFLTTSFSVLEEQPMDMLLGLDMLKRHQCNIDLKRGVLRIGT 224
           G Q I+GRIHMVQ++IE D LT+SF+VL +QPMDMLLGLDMLKRHQC IDL+R +L IGT
Sbjct: 291 GTQPILGRIHMVQLQIENDHLTSSFTVLGQQPMDMLLGLDMLKRHQCLIDLQRNLLIIGT 350

Query: 223 TGTETPFLPESDLPECARLSGVSEDDIVNQSVKDHEERQIREA 95
           TGT TPFLPES+LP  ARL+G SED +  +++ +  E+  RE+
Sbjct: 351 TGTTTPFLPESELPVSARLTGNSEDSMEQEAISNAIEQSKRES 393


>AY075184-1|AAL68054.1|  458|Drosophila melanogaster AT13091p
           protein.
          Length = 458

 Score =  317 bits (779), Expect = 9e-87
 Identities = 148/223 (66%), Positives = 180/223 (80%)
 Frame = -2

Query: 763 GSLDTFAAVLREQIXARTERQQQRIRMMNSDPFDTEAQRMIAEEIRQKNIEANMEAAMEY 584
           G  + FA +LRE I  R  R + R+RM+N+DPFD E QR+IAEEI+QKNI+ NM AA+EY
Sbjct: 171 GDKEKFARLLREHITERKRRNEHRMRMLNADPFDEETQRLIAEEIKQKNIQDNMAAAIEY 230

Query: 583 NPETFGTVVMLYINCHVNGFPVKAFIDSGAQTTIMSAACAERCNIMRLVDTRWAGIAKGV 404
           NPE FGTV MLYINC VNG PVKAF+DSGAQTTIMS  CAERC++ RL+DTRW G+AKGV
Sbjct: 231 NPEIFGTVTMLYINCKVNGIPVKAFVDSGAQTTIMSKDCAERCHVNRLIDTRWNGVAKGV 290

Query: 403 GVQRIIGRIHMVQMRIEQDFLTTSFSVLEEQPMDMLLGLDMLKRHQCNIDLKRGVLRIGT 224
           G Q I+GRIHMVQ++IE D LT+SF+VL +QPMDMLLGLDMLKRHQC IDL+R +L IGT
Sbjct: 291 GTQPILGRIHMVQLQIENDHLTSSFTVLGQQPMDMLLGLDMLKRHQCLIDLQRNLLIIGT 350

Query: 223 TGTETPFLPESDLPECARLSGVSEDDIVNQSVKDHEERQIREA 95
           TGT TPFLPES+LP  ARL+G SED +  +++ +  E+  RE+
Sbjct: 351 TGTTTPFLPESELPVSARLTGNSEDSMEQEAISNAIEQSKRES 393


>AE014298-2408|AAF48614.1|  458|Drosophila melanogaster CG4420-PA
           protein.
          Length = 458

 Score =  317 bits (779), Expect = 9e-87
 Identities = 148/223 (66%), Positives = 180/223 (80%)
 Frame = -2

Query: 763 GSLDTFAAVLREQIXARTERQQQRIRMMNSDPFDTEAQRMIAEEIRQKNIEANMEAAMEY 584
           G  + FA +LRE I  R  R + R+RM+N+DPFD E QR+IAEEI+QKNI+ NM AA+EY
Sbjct: 171 GDKEKFARLLREHITERKRRNEHRMRMLNADPFDEETQRLIAEEIKQKNIQDNMAAAIEY 230

Query: 583 NPETFGTVVMLYINCHVNGFPVKAFIDSGAQTTIMSAACAERCNIMRLVDTRWAGIAKGV 404
           NPE FGTV MLYINC VNG PVKAF+DSGAQTTIMS  CAERC++ RL+DTRW G+AKGV
Sbjct: 231 NPEIFGTVTMLYINCKVNGIPVKAFVDSGAQTTIMSKDCAERCHVNRLIDTRWNGVAKGV 290

Query: 403 GVQRIIGRIHMVQMRIEQDFLTTSFSVLEEQPMDMLLGLDMLKRHQCNIDLKRGVLRIGT 224
           G Q I+GRIHMVQ++IE D LT+SF+VL +QPMDMLLGLDMLKRHQC IDL+R +L IGT
Sbjct: 291 GTQPILGRIHMVQLQIENDHLTSSFTVLGQQPMDMLLGLDMLKRHQCLIDLQRNLLIIGT 350

Query: 223 TGTETPFLPESDLPECARLSGVSEDDIVNQSVKDHEERQIREA 95
           TGT TPFLPES+LP  ARL+G SED +  +++ +  E+  RE+
Sbjct: 351 TGTTTPFLPESELPVSARLTGNSEDSMEQEAISNAIEQSKRES 393


>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
           Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 33.9 bits (74), Expect = 0.25
 Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 4/161 (2%)
 Frame = -2

Query: 715 RTERQQQRIRMMNSDPFDTEAQRMIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCH 536
           ++E+ QQ+     S+P   +    +A   R    E      + YN   F T    +I+  
Sbjct: 2   QSEQLQQKQCQCTSNPRTGQ----LATAFRYSVEEDRRVYTINYNLNIFST----FIHAK 53

Query: 535 VNGFPVKAFIDSGAQTTIMSAACAERCNIMRLVDTRWAGIAKGVGVQRIIGRIH-MVQMR 359
             G  +   +D+GA  +I+     +  NI     T    I +G+G Q+I  R    ++++
Sbjct: 54  T-GVKLVFLLDTGADISILKENSDKFSNIQI---TNKINI-QGIGQQKIQSRGQTFIEIQ 108

Query: 358 IEQDFLTTSFSVLEEQ---PMDMLLGLDMLKRHQCNIDLKR 245
             +  +   F ++++    P D ++G+D +K++ C IDL +
Sbjct: 109 TGKYVIPHDFHLVDKNFPIPCDGIIGIDFIKKYNCQIDLNQ 149


>AE014134-3185|AAF53863.1|  470|Drosophila melanogaster CG13966-PA
           protein.
          Length = 470

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 694 RIRMMNSDPFDTEAQRMIAEEIRQK 620
           R+ MMN DP D    R I EE+R K
Sbjct: 95  RLNMMNQDPKDLHTARAIIEELRSK 119


>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
           transcriptase polyprotein protein.
          Length = 1041

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 30/117 (25%), Positives = 45/117 (38%)
 Frame = -2

Query: 550 YINCHVNGFPVKAFIDSGAQTTIMSAACAERCNIMRLVDTRWAGIAKGVGVQRIIGRIHM 371
           YI   + G  +K  ID+GA    +     E  NIM + +        G    +    I +
Sbjct: 20  YIEREIAGRTIKLLIDTGASKNYIQPL-PELKNIMPVQNKFTVKSLHGCNTVKQKCFIKL 78

Query: 370 VQMRIEQDFLTTSFSVLEEQPMDMLLGLDMLKRHQCNIDLKRGVLRIGTTGTETPFL 200
               + Q F+  S S       D ++GLD+LK+    +D K   L I        FL
Sbjct: 79  FNTSV-QFFILPSLS-----SFDAIIGLDLLKQGNATLDFKNKTLNINNEVESIQFL 129


>AY058604-1|AAL13833.1|  585|Drosophila melanogaster LD29806p
           protein.
          Length = 585

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 334 SFSVLEEQPMDMLLGLDMLKRHQCNIDLKRGVLRIGTTGTETPFLPESDLPECAR 170
           +FS+L+ Q     LGL     +QCNID   G  +IG +        +  L +C R
Sbjct: 420 AFSLLQAQKRSNELGLTNCVFYQCNIDYFVGGFKIGASLHACGTATDIVLQQCRR 474


>AE014298-1473|AAF46608.1| 2090|Drosophila melanogaster CG9817-PA
            protein.
          Length = 2090

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 745  AAVLREQIXARTERQQQRIRMMNSDPFDTEAQRMIAEEIRQK 620
            A  L  Q   + ++QQQ+ + ++ DP D E +    E++R+K
Sbjct: 1021 AHALPHQQQQQQQQQQQQQQQLHGDPDDEEVENARLEQVRRK 1062


>AE014134-2996|AAF53723.2|  585|Drosophila melanogaster CG10428-PA
           protein.
          Length = 585

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 334 SFSVLEEQPMDMLLGLDMLKRHQCNIDLKRGVLRIGTTGTETPFLPESDLPECAR 170
           +FS+L+ Q     LGL     +QCNID   G  +IG +        +  L +C R
Sbjct: 420 AFSLLQAQKRSNELGLTNCVFYQCNIDYFVGGFKIGASLHACGTATDIVLQQCRR 474


>AE014297-1245|AAF54593.2|  487|Drosophila melanogaster CG17200-PA
           protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 477 DIIVVWAPESMNAFTGNPLT*QLIYNITTVPKVSGLYSIAASMLASI 617
           +I  ++ PE +N+F G P   Q    I  + K    YS+AA   A I
Sbjct: 66  NIYDIYVPEVLNSFDGKPGKAQFDLIIVDIWKYDAFYSLAAYFEAPI 112


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,098,992
Number of Sequences: 53049
Number of extensions: 808457
Number of successful extensions: 2531
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2530
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)