Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k18
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50068-3|AAD47115.1|  389|Caenorhabditis elegans Hypothetical pr...   142   3e-34
U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical pr...    31   0.90 
AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical ...    31   1.2  
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    30   2.1  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>U50068-3|AAD47115.1|  389|Caenorhabditis elegans Hypothetical
           protein C01G5.6 protein.
          Length = 389

 Score =  142 bits (343), Expect = 3e-34
 Identities = 69/176 (39%), Positives = 111/176 (63%), Gaps = 1/176 (0%)
 Frame = -2

Query: 709 ERQQQRIRMMNSDPFDTEAQRMIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCHVN 530
           E +  +  ++ ++P   EA+  +  +  ++ I+     +M ++PE    V MLYIN  +N
Sbjct: 193 EEEVHKEEIIKNNPNSAEAKMFLEAKRNKELIDEQYLHSMTHHPEDMIAVTMLYINLTIN 252

Query: 529 GFPVKAFIDSGAQTTIMSAACAERCNIMRLVDTRWAGIAKGV-GVQRIIGRIHMVQMRIE 353
           G PVKAFIDSGAQ +IMS ACAERC +  L+D R+  +A+GV G ++I G+IH+  +++E
Sbjct: 253 GVPVKAFIDSGAQKSIMSMACAERCGLNGLIDRRFQSMARGVGGTEKIEGKIHLCDVKVE 312

Query: 352 QDFLTTSFSVLEEQPMDMLLGLDMLKRHQCNIDLKRGVLRIGTTGTETPFLPESDL 185
               +  F V+  + MD+L+GL++L++H C I+LK   L  G  GT TPFL  +++
Sbjct: 313 DAHFSCPFEVMARREMDLLIGLNVLRKHGCCINLKTSRLEFG-NGTTTPFLQSNEI 367


>U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical
           protein B0244.9 protein.
          Length = 180

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 554 HYNCSKSLWIIFHCSLHVGFYIFLPNFFSN 643
           HY  S  +W++F  +L++G  +FLP +FSN
Sbjct: 73  HY--SYFIWLVF-ATLYMGLIVFLPEYFSN 99


>AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical
           protein Y38H6C.5 protein.
          Length = 915

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = -2

Query: 700 QQRIRMMNSDPFDT-EAQRMIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCHVNGF 524
           ++++ M N DP+ + E+   ++   ++   +   + A       F T     +    NG 
Sbjct: 450 RRQLAMQNDDPYSSDESTEALSLSCQKPKEDPTPQQASHSTRHGFITA---QVPIRANGM 506

Query: 523 PVKAFIDSGAQTTIMSAACAERCNIMRLVDTR 428
           P  A ID+GA  T+ S +  +   I +L  ++
Sbjct: 507 PQSALIDTGAHITLASRSVCKILGISQLKSSK 538


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
            protein C32E8.11 protein.
          Length = 1927

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
 Frame = -2

Query: 619  NIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAF------IDSGAQTTIMSAACAER 458
            N+E   E+ ME +P    T+  LY  CH    P++        ++ GAQ+ +   A    
Sbjct: 1639 NMEEEQESQMEVDPVAAQTIRKLYALCHPFDGPLRRVDILWRKMEEGAQSLLRPIALL-- 1696

Query: 457  CNIMRLVDTRWA----GIAKGVGVQRIIGRIHMVQMRIEQDFLTTSFSVLEEQ-PMDMLL 293
             + + LVD   A     I     + R +G  H ++ +I    L   F++     P D  L
Sbjct: 1697 YHFITLVDPPEALKDPSINSSEPLFRYLGLPHKIEEQISGSMLEKLFTMWSSSIPSDQAL 1756

Query: 292  GLDML 278
              D++
Sbjct: 1757 RQDLV 1761


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = +1

Query: 172 GRILEDQILAGTASRYRSCRSVEHHV*GRCCTDAV*AYQDRAAYPWAVPLAQRTRSSRSP 351
           G + +  +  G     R+C   E    G  CT      ++   +P A+P  + +    SP
Sbjct: 694 GVVCKKPLKCGVHVCQRTCHGEECEKEGEKCTKKCETIRELCEHPCALPCHEDSPCEPSP 753

Query: 352 VRFS-SAPCECDR 387
            + S    CEC R
Sbjct: 754 CKASVRISCECGR 766


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,822,327
Number of Sequences: 27780
Number of extensions: 400604
Number of successful extensions: 1221
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)