Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k17
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    26   3.6  
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    26   4.8  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   6.3  

>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 158 RIDNSICFLIGGCIQAMISCCV*STISNPRNFVIP 262
           R+ N +CF I   ++A    C  +  ++ RNF+IP
Sbjct: 2   RVPNEVCFNILSYLEADELRCKSTVCTSWRNFIIP 36


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 367 GIGVYKVSSAYRRPEIFKPPNLSSLESGLRVAIYHRND 254
           G G+  V+++   P+IFK  +L +  SG  V+ ++  D
Sbjct: 316 GFGITLVNASKATPDIFKYFDLPTTASGWNVSYHNAKD 353


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 488 ISDKLFHCRECKNPNLYN 541
           + D  ++C ECK+ +LYN
Sbjct: 299 LPDDAWYCNECKHHSLYN 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,162
Number of Sequences: 5004
Number of extensions: 39021
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)