Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14k16
(423 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi... 27 1.2
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 25 4.8
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 4.8
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 25 4.8
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 6.4
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 24 8.5
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 24 8.5
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 24 8.5
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 24 8.5
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 24 8.5
>SPAC1851.02 |||1-acylglycerol-3-phosphate
O-acyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 279
Score = 27.1 bits (57), Expect = 1.2
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 384 PVIILLTISMDILFVD-NERQDEIETFYEASQRQR 283
P++ I D++F+D + R D I+ F +A++R R
Sbjct: 136 PILGWFMILSDVVFIDRSRRSDAIQLFAKAARRMR 170
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 25.0 bits (52), Expect = 4.8
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Frame = -1
Query: 327 QDEIETFYEASQ-----RQRDYYRGLRKAYHPLTYFSDPEYMWQCPA---EMTPTY 184
++ +ETFY + +++D+Y H + +P+Y+W+ A ++P Y
Sbjct: 651 EEHLETFYNQLKDIVISKKKDFYAHSDVPAHQPDVWFEPKYLWEVLAADLSLSPVY 706
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.0 bits (52), Expect = 4.8
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = -1
Query: 255 YHPLTYFSDPEYMWQCPAEMTP 190
++P+ +F + EY+W +TP
Sbjct: 164 FYPVIFFPNKEYLWTGSDSLTP 185
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 4.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 90 GREARELRACGPESPVKL 143
G +A+E+ CG ES VKL
Sbjct: 280 GLQAKEIHLCGEESVVKL 297
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 6.4
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 243 STGGRPYVVLYNNLFVVDLPRKTFRFHLVSHYQQTKYP 356
S G P V+YN+ V +P T + +Y YP
Sbjct: 251 SRSGLPLSVMYNHFPSVPIPPATVNDTSMEYYLPNAYP 288
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 24.2 bits (50), Expect = 8.5
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -1
Query: 354 DILFVDNERQDEIETFYEAS 295
D++F++ ER+ E+E YE++
Sbjct: 690 DLVFLEEERERELEEQYEST 709
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 24.2 bits (50), Expect = 8.5
Identities = 8/31 (25%), Positives = 16/31 (51%)
Frame = -1
Query: 306 YEASQRQRDYYRGLRKAYHPLTYFSDPEYMW 214
+E+ + R Y + +++P T +P Y W
Sbjct: 366 HESVEMHRGDYLSIVTSHYPFTTIQNPGYQW 396
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 24.2 bits (50), Expect = 8.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 339 DNERQDEIETFYEASQRQRDYYRGLRKAYHPLTYFSDPEYMWQCPAEMTPTYL 181
+ +E E F E + R + GL+K+ + F D + + PA +TPT L
Sbjct: 36 EENSDEENEEFDE--EGGRFFGSGLKKSEKTVLDFLDEQEAQEEPASLTPTEL 86
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 24.2 bits (50), Expect = 8.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 2 NSEFELY**FAIYLIKALQAALLNRPAKVRSGSAGIASVRP 124
NSEF+ + F+ + L+ A N K+RS AG + P
Sbjct: 1021 NSEFDEFGPFSYKNLSVLERANRNAIEKIRSEIAGKLHISP 1061
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 24.2 bits (50), Expect = 8.5
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -3
Query: 202 RNDTYLSQLSDVPREIQTARSFTGDSGPHARNSRASRPYLSRAIQQ 65
++ ++ S++PR + + D PH RNS + R QQ
Sbjct: 25 KSPNFIPSSSNIPRSSAKTKEHSADRKPH-RNSEKKTQGMPRKNQQ 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,100
Number of Sequences: 5004
Number of extensions: 31365
Number of successful extensions: 83
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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