Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k16
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   10.0 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   10.0 
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   10.0 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   10.0 

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 157 FHVVHRKAEISRCHFGGALPHIFRIT 234
           FH+     E  R H  G++    R+T
Sbjct: 108 FHIATTSNEFIRIHHSGSITRSIRLT 133


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 157 FHVVHRKAEISRCHFGGALPHIFRIT 234
           FH+     E  R H  G++    R+T
Sbjct: 108 FHIATTSNEFIRIHHSGSITRSIRLT 133


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 157 FHVVHRKAEISRCHFGGALPHIFRIT 234
           FH+     E  R H  G++    R+T
Sbjct: 47  FHIATTSNEFIRIHHSGSITRSIRLT 72


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 327 QDEIETFYEASQRQRDYYRGLR 262
           ++ I  FY  S R  D   GLR
Sbjct: 463 ENRISNFYNGSFRNLDQLTGLR 484


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 92  TVP*PGDSTKQLVKPLLDKSQTTNTT 15
           T+P P D      +P   KSQ + TT
Sbjct: 27  TMPMPDDMRTVTKRPKTKKSQGSRTT 52


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 235 Q*S*IYVAVPRRNDTYLSQLSDVPREI 155
           Q S ++VA+PR  D     L  V RE+
Sbjct: 69  QQSTVFVAIPRIQDGVPLTLGYVTREV 95


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 258 PYVVLYNNLFVVDLPRKTFRF 320
           P  VLYN L V +   +TF++
Sbjct: 571 PSDVLYNRLVVSEDGSETFKY 591


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 258 PYVVLYNNLFVVDLPRKTFRF 320
           P  VLYN L V +   +TF++
Sbjct: 571 PSDVLYNRLVVSEDGSETFKY 591


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 41  DKSQTTNTTRT 9
           DKS T+NT++T
Sbjct: 89  DKSNTSNTSKT 99


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 315 RFHLVSHYQQTKYPC 359
           + H V+HY +  Y C
Sbjct: 248 KLHQVAHYGEKVYKC 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,746
Number of Sequences: 438
Number of extensions: 2319
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)