Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k15
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    29   0.92 
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.1  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    27   2.1  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    26   4.9  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 317 STLIFKCSHNKISNTSLITFW 255
           ST IF CS +KI N  L+ FW
Sbjct: 512 STFIFLCSLSKILNGPLVPFW 532


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 308 IFKCSHNKISNTSLITFWSLKFSKIMAKH 222
           I K SH+KIS + LIT   + +S++  K+
Sbjct: 18  ISKISHSKISISELITLLDIHYSELFTKN 46


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 738 SDHFHHIHRGSRYLISHR-PDSPTNSSP 658
           S H HH    S Y +S   P SPT+S P
Sbjct: 118 SQHHHHHSSSSSYAVSPTSPTSPTSSGP 145


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 527 IARVLVHIGHVRIRGINGSNLVTETRASRGSGERAELIRIV 649
           ++++   +G V I G+N SN+      S  +G+R + I +V
Sbjct: 159 VSKMHCQLGTVAIAGLNSSNIQRVIYLSEANGKRIDGIALV 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,733
Number of Sequences: 5004
Number of extensions: 48590
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)