Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k15
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13...    30   2.2  
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565...    29   5.2  
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541...    28   6.8  
10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380     28   9.0  

>12_01_0019 -
           135627-135983,136564-136797,137118-137196,137268-137383,
           137847-137991,138177-138594,138644-138649,139315-139945
          Length = 661

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -2

Query: 726 HHIHRGSRYLISHRPDSPTNSSPRCRTIRISSARSPEPR----LARVSVTKLLPLIP 568
           HH H+ +    +   D+  N SP  RT+ +     P  R    L+ +S+T+L+ L+P
Sbjct: 122 HHQHQPATPTETETEDTAANDSPPPRTLPVRLLNIPVDRLRSTLSTLSLTELIDLVP 178


>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
            27456774-27456872,27456948-27457012,27457476-27457575,
            27458326-27458408,27458494-27458569,27458920-27459698
          Length = 1515

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 569  GINGSNLVTETRASRGSGERAELIRIVLHRGELFVGESGRWEI 697
            G+NG     E   +RG   R E + +V H GEL VG     E+
Sbjct: 1382 GVNGGG--DEHPEARGRPRRPEAVVLVAHVGELLVGGDRHQEV 1422


>08_01_0619 +
           5412058-5413224,5413357-5413476,5413755-5413831,
           5414201-5414321
          Length = 494

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -2

Query: 732 HFHHIHRGSRYLISHRPDSPTNSSPRCRTIRISSARSPEPRLARVSVTKLLPLIP 568
           H HH H  +   +   P   TN +PR R  R S +  P P   R     + P +P
Sbjct: 13  HHHHHHHWADARVPLMPKHATNPNPR-RHHRPSPSIPPPPPPQRPPAATVAPSVP 66


>10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380
          Length = 411

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 714 RGSRYLISHRPDSPTNSSPRCRTIRISSARSPEPR 610
           R +RY + H P S  +S  RC +  I++ R P PR
Sbjct: 118 RRTRYGLCHHPTSRRSSRRRCSSTSITT-RRPPPR 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,572,750
Number of Sequences: 37544
Number of extensions: 281407
Number of successful extensions: 702
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)