Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k15
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z70267-3|CAA94214.1|  534|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z70267-2|CAA94213.1|  525|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U40417-12|AAM69086.1|  143|Caenorhabditis elegans Hypothetical p...    28   8.0  

>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 742 PFRPFPSYPQ-RFPIFNFPSPGFTDEQFPAMQNY 644
           P  P PSYP   +P  ++PSP +    +PA   Y
Sbjct: 365 PSYPSPSYPSPSYPSPSYPSPSYPSPSYPAEPAY 398


>Z70267-3|CAA94214.1|  534|Caenorhabditis elegans Hypothetical
           protein K04C1.2b protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 696 ISHRPDSPTNSSPRCRTIRISSARSPE 616
           IS+R D P NS+P+C   + ++  SP+
Sbjct: 185 ISNRNDDPQNSTPKCSDTKKNTKISPK 211


>Z70267-2|CAA94213.1|  525|Caenorhabditis elegans Hypothetical
           protein K04C1.2a protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 696 ISHRPDSPTNSSPRCRTIRISSARSPE 616
           IS+R D P NS+P+C   + ++  SP+
Sbjct: 176 ISNRNDDPQNSTPKCSDTKKNTKISPK 202


>U40417-12|AAM69086.1|  143|Caenorhabditis elegans Hypothetical
           protein T08A9.2 protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 654 IAGNCSSVNPGDGKLNIGNLCGYDG 728
           +AG+ S V   D KLNI + C YDG
Sbjct: 74  MAGSKSEVTTIDPKLNIYHKCNYDG 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,322,975
Number of Sequences: 27780
Number of extensions: 276936
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)