Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14k12
(259 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 25 1.7
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 2.2
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 2.2
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 24 2.9
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 23 5.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 23 5.1
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 23 5.1
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 23 6.7
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 23 8.9
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 8.9
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 8.9
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 1.7
Identities = 8/36 (22%), Positives = 18/36 (50%)
Frame = -2
Query: 126 PLPEQRATNTTVLSCKSLHQHIQLLHSNYVTAMERF 19
PLP++ + +C ++ H Q +V +E++
Sbjct: 366 PLPKKELAELNIQNCLRIYPHFQNTGGFFVAVLEKY 401
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 24.6 bits (51), Expect = 2.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 71 CKDLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNN 190
CK Q+S +V+ G+GA+M D+ ++ + + N
Sbjct: 531 CKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIEN 570
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 24.6 bits (51), Expect = 2.2
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = -2
Query: 126 PLPEQRATNTTVLSCKSLHQHIQLLHSNYVTAMER 22
PLPE+ + + C L+ H+Q +V +++
Sbjct: 395 PLPEEEMSKLHIERCARLYPHMQNTGGFFVAVLQK 429
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 24.2 bits (50), Expect = 2.9
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 187 IVHQS-VHLRIVVRSVDLHLRSFARAACHQHNGAIL*ILASTYTAVTLKLCNRNGAIS 17
I+H S VH+ + S D+ + ++ +A H H + AST K + +IS
Sbjct: 63 IIHDSAVHIAPLPSSCDIDFKDYSTSAFHLHFSPLTPNHASTEAVSNFKQSSTIPSIS 120
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 71 CKDLQDSTVVLVARCSGKGAEMQV 142
C+ +QD+ V++V +G G Q+
Sbjct: 106 CQQIQDNRVIVVVGETGSGKSTQI 129
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 182 PPVCSPPDCRPICGPASPLLCQSSVP 105
PPV +PP P P+ P S+P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLP 440
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 23.4 bits (48), Expect = 5.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 128 LLCQSSVPPTQR 93
LLCQ+S+ PTQR
Sbjct: 108 LLCQASLNPTQR 119
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 23.0 bits (47), Expect = 6.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 182 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIY 60
PP + P +C + L C +S P T R + +N I ++
Sbjct: 71 PPTLTGPTSNRVCNALALLQCIASHPET-RIHFLNAHITLF 110
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 22.6 bits (46), Expect = 8.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 133 LRSFARAACHQHNGAIL*ILASTYTAVTLKLCNRNGAISI 14
LR+F+R+AC+ + A TY V K N N +++
Sbjct: 13 LRTFSRSACYSFRFSSTKAAAGTYEGV--KNANGNYTVTM 50
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 22.6 bits (46), Expect = 8.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 152 DDNPEVNRLVDNNPFFTFLI 211
D N +NR+VD P ++L+
Sbjct: 398 DQNQLINRIVDKLPDLSYLV 417
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 22.6 bits (46), Expect = 8.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 75 RIYRIAPLCWWHAALAK 125
R Y PLC WH + A+
Sbjct: 102 RTYLEVPLCRWHISQAR 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,022,698
Number of Sequences: 5004
Number of extensions: 18448
Number of successful extensions: 55
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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