Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k12
         (259 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   0.46 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   0.80 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   1.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   3.2  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    20   4.3  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              19   7.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   7.4  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    19   9.8  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    19   9.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   9.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   9.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    19   9.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   9.8  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.4 bits (48), Expect = 0.46
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 188 YCPPVCSPPDCRPICGPASPLLCQSSVPPTQR--CYPVNPCI 69
           +CP V   P C  IC P    +C+      ++  C P + C+
Sbjct: 53  FCPNVVPKPLCIKICAPG--CVCRLGYLRNKKKVCVPRSKCL 92


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 0.80
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 188 YCPPVCSPPDCRPICGP 138
           +CP V   P C  IC P
Sbjct: 53  FCPNVVPKPLCIKICAP 69


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 188 YCPPVCSPPDCRPICGPASPLL 123
           +C P C P    P     SPLL
Sbjct: 43  FCLPFCGPNVINPFFCDMSPLL 64


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 3.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 89  YPVNPCINIYSCYTQIM*PQWSD 21
           YP    IN  S Y Q   P W D
Sbjct: 320 YPFEEDINEGSNYMQTRVPAWCD 342


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 20.2 bits (40), Expect = 4.3
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
 Frame = -3

Query: 188 YCPPVCSPPDCRP-IC--GPASPLLCQSSVPPTQRCYPVNPCINIYSCYT 48
           +C P C P    P  C   P+  LLC  +       + V   + ++S  T
Sbjct: 44  FCLPFCGPNVINPFFCDMSPSLSLLCADTRLNKLAVFIVAGAVGVFSSPT 93


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 155 DNPEVNRLVDN 187
           D+ +VNRLV+N
Sbjct: 92  DSEQVNRLVNN 102


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 221 VNLKNFTNISIKN 259
           V+LKN  NI +KN
Sbjct: 56  VSLKNEVNIMMKN 68


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 176 VCSPPDCRPICG 141
           V  P  CR ICG
Sbjct: 36  VIKPHICRKICG 47


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 89  YPVNPCI 69
           YP NPC+
Sbjct: 117 YPFNPCL 123


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 4/5 (80%), Positives = 4/5 (80%)
 Frame = +3

Query: 93  PLCWW 107
           P CWW
Sbjct: 487 PCCWW 491


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 4/5 (80%), Positives = 4/5 (80%)
 Frame = +3

Query: 93  PLCWW 107
           P CWW
Sbjct: 540 PCCWW 544


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 89  YPVNPCI 69
           YP NPC+
Sbjct: 133 YPFNPCL 139


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = +2

Query: 47  ECNSCIC*CKDLQDSTVVLVARCSGKGAEMQVHRSDDNP 163
           EC    C    ++   VV   +C+ K  E +  +  D P
Sbjct: 241 ECRLKKCLTVGMRPECVVPEYQCAVKRKEEKAQKEKDKP 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,735
Number of Sequences: 438
Number of extensions: 1474
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)