Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k08
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    33   0.041
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    32   0.094
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    29   0.88 
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    28   1.5  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   2.7  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    27   2.7  
SPBC1709.09 |||mitochondrial translation termination factor|Schi...    26   4.7  
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p...    26   4.7  
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa...    26   4.7  
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc...    26   4.7  
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce...    26   4.7  
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz...    26   4.7  
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy...    26   4.7  
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc...    26   4.7  
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc...    26   4.7  
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    26   4.7  
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy...    26   4.7  
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos...    26   4.7  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   6.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.2  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   8.2  

>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 27/114 (23%), Positives = 46/114 (40%)
 Frame = -1

Query: 535  IEIDRNRSRLNAILERKDSKDPYLPSGYQKGVLPKYLRERKEQTQKDSEVVSDSDNIQCP 356
            ++I    S++N  L  KDS D +LP+ +     P      +E +  ++     S     P
Sbjct: 952  VQIALADSKMNQQLSGKDSTDVHLPTDFSASSSPLRSYFNEEDSFNNASAAHSSKESDIP 1011

Query: 355  PGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAK 194
             G V          L     + A   NDL+K    +D +  + K + L  Q++K
Sbjct: 1012 SGGVFTKYRNHFGNLMTSEETKAPDNNDLHKR--LSDVINSQQKFLSLSPQVSK 1063


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 31.9 bits (69), Expect = 0.094
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = -2

Query: 444 EFYQNISENGRSRHKKILK*SVIVTIFSVHLDMSPYLIMRERKHFGCYEIVLRNLS 277
           +F +  S N   + KK+LK   I+T+  VHL +SP+++ R  + F     +L+  S
Sbjct: 314 QFLKEASLNTLIKDKKMLK--FIITVRPVHLHVSPWVVYRRYRGFKTLYYLLKKQS 367


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 343 TLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMEL 212
           T+ +NE  E +RM  ++F E++ D  K  V      +R K  EL
Sbjct: 128 TIVNNESAEIIRMFNDAFNEVIEDEEKRVVDLYPSSLRTKIDEL 171


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 493 ERKDSKDPYLPSGYQKGVLPKYLRERKEQTQKDSE 389
           E   ++D Y P G +K +  +  R RKE+ ++D +
Sbjct: 565 EYDQTRDGYYPPGAEKRLTARKRRSRKEEVEEDEK 599


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = -1

Query: 451  QKGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVND 272
            Q+G L + L+  K+  +++S ++SD   ++     +++    ++ T+  L      L  D
Sbjct: 1025 QEGSLSESLKRVKKLERENSTLISDVSILKQQKEELSVLKGVQELTINNLEEKVNYLEAD 1084

Query: 271  LNKLPVKTDTLKMRNKKMEL-EKQLAKLEE 185
            + +LP     L+  N K +L + Q  K +E
Sbjct: 1085 VKQLPKLKKELESLNDKDQLYQLQATKNKE 1114


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -1

Query: 358 PPGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQ 203
           PP  V L  +  KE L  +R  F++   D+ K  ++T+ L+  NK+ + EK+
Sbjct: 143 PPAIVLLGRHALKEFLYGVRYGFSD---DIMKRKLETEKLEANNKEEKEEKE 191


>SPBC1709.09 |||mitochondrial translation termination
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -1

Query: 334 DNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIKVFSRPKV 155
           D + K  L+ + +S    V   NKL   T  +K +   +E  +QLAK+ EG    SR ++
Sbjct: 132 DVDIKNILKAIEDSRYPFV--ANKLNASTIEVKPQRTTLESRQQLAKVLEGYAKDSREQL 189


>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 535 IEIDRNRSRLNAILERKDSKDPYLPSGYQKGVLPK 431
           +E D +   + A+L +K   D Y P GY    + K
Sbjct: 710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744


>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 535 IEIDRNRSRLNAILERKDSKDPYLPSGYQKGVLPK 431
           +E D +   + A+L +K   D Y P GY    + K
Sbjct: 710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744


>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 535 IEIDRNRSRLNAILERKDSKDPYLPSGYQKGVLPK 431
           +E D +   + A+L +K   D Y P GY    + K
Sbjct: 710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744


>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 535 IEIDRNRSRLNAILERKDSKDPYLPSGYQKGVLPK 431
           +E D +   + A+L +K   D Y P GY    + K
Sbjct: 710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744


>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 535 IEIDRNRSRLNAILERKDSKDPYLPSGYQKGVLPK 431
           +E D +   + A+L +K   D Y P GY    + K
Sbjct: 710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744


>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 535 IEIDRNRSRLNAILERKDSKDPYLPSGYQKGVLPK 431
           +E D +   + A+L +K   D Y P GY    + K
Sbjct: 710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744


>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 535 IEIDRNRSRLNAILERKDSKDPYLPSGYQKGVLPK 431
           +E D +   + A+L +K   D Y P GY    + K
Sbjct: 710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744


>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 535 IEIDRNRSRLNAILERKDSKDPYLPSGYQKGVLPK 431
           +E D +   + A+L +K   D Y P GY    + K
Sbjct: 710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 535 IEIDRNRSRLNAILERKDSKDPYLPSGYQKGVLPK 431
           +E D +   + A+L +K   D Y P GY    + K
Sbjct: 710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744


>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 535 IEIDRNRSRLNAILERKDSKDPYLPSGYQKGVLPK 431
           +E D +   + A+L +K   D Y P GY    + K
Sbjct: 710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744


>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 535 IEIDRNRSRLNAILERKDSKDPYLPSGYQKGVLPK 431
           +E D +   + A+L +K   D Y P GY    + K
Sbjct: 710 LETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSK 744


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 481 SKDPYLPSGYQK-GVLPKYLRERKEQTQKDSE 389
           S DPY  SG +    +PK+ R+RK++ +K  E
Sbjct: 16  SSDPY--SGRRPIPTIPKFFRDRKQRAEKKEE 45


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 141  PILTKTFGREKTFIPSSNFASCFSNSIFLLRILRVSVLTGNLFKSLTSSAKLFRSIRSVS 320
            P+L K   RE      S   SC  +  +L ++   + +  NL+  L+    L + + SV 
Sbjct: 1603 PLLVKDTFREFAEASVSGLLSCDESFHYLTQLYYTADIVRNLWILLSQRNSLLKCMESVE 1662

Query: 321  F 323
            F
Sbjct: 1663 F 1663


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 388 LQNLFVSAPSVLGDILVKLLF 450
           + N+F+SAP VL  I+  ++F
Sbjct: 492 VHNVFISAPQVLSTIIATIVF 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,150
Number of Sequences: 5004
Number of extensions: 51308
Number of successful extensions: 185
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)