Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14k08
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 34 0.13
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 34 0.13
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 33 0.23
02_04_0142 + 20167876-20169108 33 0.30
10_08_0438 + 17919355-17919391,17919491-17919544,17919928-179201... 31 1.2
02_01_0695 - 5202091-5202498,5204103-5204588 30 1.6
05_06_0189 + 26257587-26257791,26257962-26258003,26258064-262584... 30 2.1
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369... 29 2.8
08_02_0040 - 11526922-11527319,11528229-11528511 29 2.8
03_05_0977 + 29355824-29357056 29 3.7
10_08_0915 + 21539651-21540226,21540276-21541139 29 4.9
07_01_0873 - 7257016-7257957,7260083-7260262 29 4.9
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 29 4.9
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 28 6.4
09_02_0164 + 5144935-5144942,5145893-5145932,5146245-5146491,514... 28 6.4
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300... 28 8.5
02_03_0362 + 18158975-18159337 28 8.5
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -1
Query: 718 SEMLLAXTIESXLSQKLTESTKLTVLYPKKEDDGKVKACGDTGLHRSPPPSQTPRKGGDE 539
SE + A + LS K E KL +L E G + GDT L + +PR +
Sbjct: 337 SEKISARDLNKTLSPKSRERAKLLML----EYAGSERGQGDTDLETASSAPSSPRSEDFD 392
Query: 538 NIEIDRNRSR 509
N+ +D + SR
Sbjct: 393 NVSVDSSSSR 402
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -1
Query: 592 GLHRSPPPSQTPRKGGDENIEIDRNRSRLNAILER--KDSKDPYLPSGYQKGVL 437
GL + + P E+IEIDRN S LN +++ ++ PY+P + GV+
Sbjct: 594 GLDKQAVENVMPADASCEDIEIDRNLSFLNGYVQQAIENGAAPYIPESERSGVV 647
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 33.1 bits (72), Expect = 0.23
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = -1
Query: 718 SEMLLAXTIESXLSQKLTESTKLTVLYPKKEDDGKVKACGDTGLHRSPPPSQTPRKGGDE 539
SE + A + LS K E KL +L E G + GDT L + +PR +
Sbjct: 642 SEKISARYLNKTLSPKSRERAKLLML----EYAGSERGQGDTDLETASSAPSSPRSEDLD 697
Query: 538 NIEIDRNRSR 509
N+ +D + SR
Sbjct: 698 NVSVDSSSSR 707
>02_04_0142 + 20167876-20169108
Length = 410
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/33 (36%), Positives = 25/33 (75%)
Frame = -1
Query: 274 DLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIK 176
+L K+ ++ + +K+ N+++ELE +L ++E GIK
Sbjct: 371 ELEKMRLENEKMKLENERLELELKLKEIEMGIK 403
>10_08_0438 +
17919355-17919391,17919491-17919544,17919928-17920186,
17920396-17920484,17920645-17920775,17920900-17920946,
17921029-17921137,17921217-17921303,17921521-17921692,
17921837-17922309,17922402-17922463,17922537-17922639,
17923535-17923636
Length = 574
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -1
Query: 481 SKDPYLPSGYQKGVLPKYLRERKEQTQKDS 392
S++PY S Y++G + ++RE K++ Q ++
Sbjct: 502 SREPYRESDYERGTVTDFMREEKKRRQMEA 531
>02_01_0695 - 5202091-5202498,5204103-5204588
Length = 297
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -1
Query: 640 YPKKEDDGKVKACGDTGLHRSPPPSQT---PRKGG 545
YP K + + KA G G PPPS + PR+GG
Sbjct: 205 YPTKANAAQSKAAGGGGCRPPPPPSASSSRPRRGG 239
>05_06_0189 +
26257587-26257791,26257962-26258003,26258064-26258436,
26258515-26258656,26259356-26259514,26259599-26259661,
26259992-26260180
Length = 390
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = -1
Query: 346 VTLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIKVFS 167
VT + E++E M F +L + K + +LK +K+E++K L ++
Sbjct: 243 VTPNEEEKEEDKEMTLEEFEKLREEKRKALL---SLKTEERKVEIDKDLKSMQPLSNKKE 299
Query: 166 RPKVFVKIG 140
+VF+K+G
Sbjct: 300 NDEVFIKLG 308
>12_02_0785 +
23135764-23135973,23136061-23136713,23136822-23136903,
23137031-23137113,23137229-23137361,23137493-23137664,
23137929-23138656
Length = 686
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 461 RQVRIFTVLPFQYSIKTTSVPIYFYI 538
R V++F +LPF+ S++ S P Y YI
Sbjct: 121 RLVKVFLLLPFRNSMQPRSCPNYIYI 146
>08_02_0040 - 11526922-11527319,11528229-11528511
Length = 226
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/64 (23%), Positives = 33/64 (51%)
Frame = -1
Query: 358 PPGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEGI 179
PP V PD +++ +++ S +L + KL + + +++R++ EL +LA++
Sbjct: 142 PPPIVRAPDQYQEDEVKLPEPSIHKLAAQVKKL--RKENIELRDRNAELGVELAEIRNNF 199
Query: 178 KVFS 167
S
Sbjct: 200 DTLS 203
>03_05_0977 + 29355824-29357056
Length = 410
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = -1
Query: 421 ERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVKTDT 242
ERKE++Q+D E DN+ H P E+ E LR ++ + + +P
Sbjct: 144 ERKERSQEDQEKTFHGDNVSSAVSH-DPPSAEQDELLRHAQDKILYVDDASTAVPHDNQE 202
Query: 241 LKMRNKKMELEKQL 200
+ R ++ +++
Sbjct: 203 AERREEEARKAREM 216
>10_08_0915 + 21539651-21540226,21540276-21541139
Length = 479
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -1
Query: 424 RERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVK 251
RER+E ++ + ++S D + CP G R+ L FAEL +++N + V+
Sbjct: 332 REREEDRRRMASLLSRGDVVVCPEGTTC-----REPYLLRFSPLFAELADEVNPVAVR 384
>07_01_0873 - 7257016-7257957,7260083-7260262
Length = 373
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 286 ELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEG 182
E + DL + +DT K+ NKK+E EK L + E G
Sbjct: 290 ERIADLTPTEMASDTRKLENKKIE-EKALFECERG 323
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = -1
Query: 334 DNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIKVFSR 164
D K+T + + +AEL +N L KT+ +M K++ ++++ L++ +KV R
Sbjct: 333 DTSLKDTSFVQCHEYAELYQIINDLSKKTE--EMEKMKVDSDQEILLLKKLVKVMER 387
>11_02_0051 +
7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -1
Query: 460 SGYQKGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRN 296
+GY+ V P +L E + V+S+ +++C P V L + R LR + N
Sbjct: 785 TGYRSPVYPSWLLEDSYFVNLKTLVLSNCTSLECLPSSVQLIKHFRHIALRNILN 839
>09_02_0164 +
5144935-5144942,5145893-5145932,5146245-5146491,
5146512-5146873
Length = 218
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/59 (27%), Positives = 34/59 (57%)
Frame = -1
Query: 343 TLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIKVFS 167
T+ NE + L + R + +NDLN P+ T+T ++ + E+Q+ +++E I +++
Sbjct: 161 TMDINEPSQELEVARGTRMFHINDLNVPPIWTET---PEEEDDPEEQVFEMQEHISMYA 216
>05_01_0384 +
2997465-2999777,2999960-3000035,3003027-3003102,
3003571-3004442,3004592-3004773,3005206-3005295,
3005388-3005675,3005776-3005997,3006053-3006133,
3006634-3006861
Length = 1475
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 415 KEQTQKDSEVVSDSDNIQCPPGH 347
KE+ + DS V+ D +QCPP H
Sbjct: 741 KEKVEDDSLGVAHFDVVQCPPDH 763
>02_03_0362 + 18158975-18159337
Length = 120
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 586 HRSPPPSQTPRKGGD 542
H +PPPS P +GGD
Sbjct: 104 HHNPPPSSAPGRGGD 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,944,343
Number of Sequences: 37544
Number of extensions: 301745
Number of successful extensions: 1065
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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