Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14k08
(718 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008284-1|AAH08284.1| 346|Homo sapiens chromosome 16 open read... 93 7e-19
AY358834-1|AAQ89193.1| 228|Homo sapiens DAKV6410 protein. 93 7e-19
BC115701-1|AAI15702.1| 828|Homo sapiens SLMAP protein protein. 34 0.44
BC114627-1|AAI14628.1| 790|Homo sapiens SLMAP protein protein. 34 0.44
AY358410-1|AAQ88776.1| 296|Homo sapiens SLAP protein. 34 0.44
AK124200-1|BAC85803.1| 506|Homo sapiens protein ( Homo sapiens ... 34 0.44
AB046821-1|BAB13427.1| 690|Homo sapiens KIAA1601 protein protein. 34 0.44
U77718-1|AAB48304.1| 743|Homo sapiens pinin protein. 30 9.5
BC104896-1|AAI04897.1| 983|Homo sapiens USP48 protein protein. 30 9.5
BC020641-1|AAH20641.1| 259|Homo sapiens ribosomal RNA processin... 30 9.5
BC007326-1|AAH07326.2| 305|Homo sapiens USP48 protein protein. 30 9.5
AL590103-4|CAI12127.1| 1035|Homo sapiens ubiquitin specific pept... 30 9.5
AL359815-10|CAI16260.1| 521|Homo sapiens ubiquitin specific pep... 30 9.5
AL359815-6|CAI16256.1| 1035|Homo sapiens ubiquitin specific pept... 30 9.5
AF502942-1|AAP30832.1| 1035|Homo sapiens ubiquitin-specific prot... 30 9.5
AF151873-1|AAD34110.1| 259|Homo sapiens CGI-115 protein protein. 30 9.5
>BC008284-1|AAH08284.1| 346|Homo sapiens chromosome 16 open reading
frame 48 protein.
Length = 346
Score = 93.5 bits (222), Expect = 7e-19
Identities = 44/106 (41%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Frame = -1
Query: 451 QKGVLPKYLRERKEQTQKDSEVVSDSD-NIQCPPGHVTLPDNERKETLRMLRNSFAELVN 275
QKG +P YL ER++ ++++E S + PPGH +P+N+R ETL L S ++L+
Sbjct: 241 QKGHVPHYLLERRDLWRREAEARKQSQPDPAMPPGHTRMPENQRLETLTKLLQSQSQLLR 300
Query: 274 DLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIKVFSRPKVFVKIGE 137
+L LP D+L+ ++ + EL+++L ++EE IK+FSRPKVFVK+ +
Sbjct: 301 ELVLLPAGADSLRAQSHRAELDRKLVQVEEAIKIFSRPKVFVKMDD 346
>AY358834-1|AAQ89193.1| 228|Homo sapiens DAKV6410 protein.
Length = 228
Score = 93.5 bits (222), Expect = 7e-19
Identities = 44/106 (41%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Frame = -1
Query: 451 QKGVLPKYLRERKEQTQKDSEVVSDSD-NIQCPPGHVTLPDNERKETLRMLRNSFAELVN 275
QKG +P YL ER++ ++++E S + PPGH +P+N+R ETL L S ++L+
Sbjct: 123 QKGHVPHYLLERRDLWRREAEARKQSQPDPAMPPGHTRMPENQRLETLTKLLQSQSQLLR 182
Query: 274 DLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIKVFSRPKVFVKIGE 137
+L LP D+L+ ++ + EL+++L ++EE IK+FSRPKVFVK+ +
Sbjct: 183 ELVLLPAGADSLRAQSHRAELDRKLVQVEEAIKIFSRPKVFVKMDD 228
>BC115701-1|AAI15702.1| 828|Homo sapiens SLMAP protein protein.
Length = 828
Score = 34.3 bits (75), Expect = 0.44
Identities = 26/88 (29%), Positives = 42/88 (47%)
Frame = -1
Query: 448 KGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDL 269
K L + L+E+ E +K SEV N + H+ + +E LR L N + VN++
Sbjct: 255 KESLRRVLQEKIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEI 314
Query: 268 NKLPVKTDTLKMRNKKMELEKQLAKLEE 185
L +D LK+ K E +Q + E+
Sbjct: 315 KDL---SDKLKVAEGKQEEIQQKGQAEK 339
>BC114627-1|AAI14628.1| 790|Homo sapiens SLMAP protein protein.
Length = 790
Score = 34.3 bits (75), Expect = 0.44
Identities = 26/88 (29%), Positives = 42/88 (47%)
Frame = -1
Query: 448 KGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDL 269
K L + L+E+ E +K SEV N + H+ + +E LR L N + VN++
Sbjct: 255 KESLRRVLQEKIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEI 314
Query: 268 NKLPVKTDTLKMRNKKMELEKQLAKLEE 185
L +D LK+ K E +Q + E+
Sbjct: 315 KDL---SDKLKVAEGKQEEIQQKGQAEK 339
>AY358410-1|AAQ88776.1| 296|Homo sapiens SLAP protein.
Length = 296
Score = 34.3 bits (75), Expect = 0.44
Identities = 26/88 (29%), Positives = 42/88 (47%)
Frame = -1
Query: 448 KGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDL 269
K L + L+E+ E +K SEV N + H+ + +E LR L N + VN++
Sbjct: 123 KESLRRVLQEKIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEI 182
Query: 268 NKLPVKTDTLKMRNKKMELEKQLAKLEE 185
L +D LK+ K E +Q + E+
Sbjct: 183 KDL---SDKLKVAEGKQEEIQQKGQAEK 207
>AK124200-1|BAC85803.1| 506|Homo sapiens protein ( Homo sapiens
cDNA FLJ42206 fis, clone THYMU2035735, highly similar
to Oryctolagus cuniculus sarcolemmal associated
protein-3 mRNA. ).
Length = 506
Score = 34.3 bits (75), Expect = 0.44
Identities = 26/88 (29%), Positives = 42/88 (47%)
Frame = -1
Query: 448 KGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDL 269
K L + L+E+ E +K SEV N + H+ + +E LR L N + VN++
Sbjct: 255 KESLRRVLQEKIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEI 314
Query: 268 NKLPVKTDTLKMRNKKMELEKQLAKLEE 185
L +D LK+ K E +Q + E+
Sbjct: 315 KDL---SDKLKVAEGKQEEIQQKGQAEK 339
>AB046821-1|BAB13427.1| 690|Homo sapiens KIAA1601 protein protein.
Length = 690
Score = 34.3 bits (75), Expect = 0.44
Identities = 26/88 (29%), Positives = 42/88 (47%)
Frame = -1
Query: 448 KGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDL 269
K L + L+E+ E +K SEV N + H+ + +E LR L N + VN++
Sbjct: 134 KESLRRVLQEKIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEI 193
Query: 268 NKLPVKTDTLKMRNKKMELEKQLAKLEE 185
L +D LK+ K E +Q + E+
Sbjct: 194 KDL---SDKLKVAEGKQEEIQQKGQAEK 218
>U77718-1|AAB48304.1| 743|Homo sapiens pinin protein.
Length = 743
Score = 29.9 bits (64), Expect = 9.5
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = -1
Query: 361 CPPGHVTLPDNERKETLRM--LRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLE 188
CP + +++RK R FAE +N + P + + ++ + E+ A+ E
Sbjct: 248 CPATQKLIEESQRKMNALFDGRRIEFAEQINKMEARPRRQSMKEKEHQVVRNEEHKAEQE 307
Query: 187 EGIKVFSRPKVFVKIGE*YDRVVVD 113
EG KV R + V+ G ++ V ++
Sbjct: 308 EG-KVAQREEELVETGNQHNDVEIE 331
>BC104896-1|AAI04897.1| 983|Homo sapiens USP48 protein protein.
Length = 983
Score = 29.9 bits (64), Expect = 9.5
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = -1
Query: 517 RSRLNAILERKDSKDPYLPSGYQKGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTL 338
RS LE+ D +D K ++ ++ +K+ E ++ +++I CP G + +
Sbjct: 600 RSWRQLALEQLDEQDGDAEQSNGKMNGSTLNKDESKEERKEEEELNFNEDILCPHGELCI 659
Query: 337 PDNERK 320
+NER+
Sbjct: 660 SENERR 665
>BC020641-1|AAH20641.1| 259|Homo sapiens ribosomal RNA processing
15 homolog (S. cerevisiae) protein.
Length = 259
Score = 29.9 bits (64), Expect = 9.5
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = -1
Query: 397 DSEVVSDSDNIQCPPGHVTLPDNERKETLRM-LRNSFAELVNDLNKLPVKTDTLKMRNKK 221
D + +DS+ P D E M ++ A+++N K P T+ ++NKK
Sbjct: 37 DDAIEADSEGDAEPCDKENENDGESSVGTNMGWADAMAKVLN--KKTPESKPTILVKNKK 94
Query: 220 MELEKQLAKLEEGIKVFSRPK 158
+E EK+ K E K+ R K
Sbjct: 95 LEKEKEKLKQERLEKIKQRDK 115
>BC007326-1|AAH07326.2| 305|Homo sapiens USP48 protein protein.
Length = 305
Score = 29.9 bits (64), Expect = 9.5
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = -1
Query: 517 RSRLNAILERKDSKDPYLPSGYQKGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTL 338
RS LE+ D +D K ++ ++ +K+ E ++ +++I CP G + +
Sbjct: 202 RSWRQLALEQLDEQDGDAEQSNGKMNGSTLNKDESKEERKEEEELNFNEDILCPHGELCI 261
Query: 337 PDNERK 320
+NER+
Sbjct: 262 SENERR 267
>AL590103-4|CAI12127.1| 1035|Homo sapiens ubiquitin specific
peptidase 48 protein.
Length = 1035
Score = 29.9 bits (64), Expect = 9.5
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = -1
Query: 517 RSRLNAILERKDSKDPYLPSGYQKGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTL 338
RS LE+ D +D K ++ ++ +K+ E ++ +++I CP G + +
Sbjct: 600 RSWRQLALEQLDEQDGDAEQSNGKMNGSTLNKDESKEERKEEEELNFNEDILCPHGELCI 659
Query: 337 PDNERK 320
+NER+
Sbjct: 660 SENERR 665
>AL359815-10|CAI16260.1| 521|Homo sapiens ubiquitin specific
peptidase 48 protein.
Length = 521
Score = 29.9 bits (64), Expect = 9.5
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = -1
Query: 517 RSRLNAILERKDSKDPYLPSGYQKGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTL 338
RS LE+ D +D K ++ ++ +K+ E ++ +++I CP G + +
Sbjct: 138 RSWRQLALEQLDEQDGDAEQSNGKMNGSTLNKDESKEERKEEEELNFNEDILCPHGELCI 197
Query: 337 PDNERK 320
+NER+
Sbjct: 198 SENERR 203
>AL359815-6|CAI16256.1| 1035|Homo sapiens ubiquitin specific
peptidase 48 protein.
Length = 1035
Score = 29.9 bits (64), Expect = 9.5
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = -1
Query: 517 RSRLNAILERKDSKDPYLPSGYQKGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTL 338
RS LE+ D +D K ++ ++ +K+ E ++ +++I CP G + +
Sbjct: 600 RSWRQLALEQLDEQDGDAEQSNGKMNGSTLNKDESKEERKEEEELNFNEDILCPHGELCI 659
Query: 337 PDNERK 320
+NER+
Sbjct: 660 SENERR 665
>AF502942-1|AAP30832.1| 1035|Homo sapiens ubiquitin-specific
protease 31 protein.
Length = 1035
Score = 29.9 bits (64), Expect = 9.5
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = -1
Query: 517 RSRLNAILERKDSKDPYLPSGYQKGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTL 338
RS LE+ D +D K ++ ++ +K+ E ++ +++I CP G + +
Sbjct: 600 RSWRQLALEQLDEQDGDAEQSNGKMNGSTLNKDESKEERKEEEELNFNEDILCPHGELCI 659
Query: 337 PDNERK 320
+NER+
Sbjct: 660 SENERR 665
>AF151873-1|AAD34110.1| 259|Homo sapiens CGI-115 protein protein.
Length = 259
Score = 29.9 bits (64), Expect = 9.5
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = -1
Query: 397 DSEVVSDSDNIQCPPGHVTLPDNERKETLRM-LRNSFAELVNDLNKLPVKTDTLKMRNKK 221
D + +DS+ P D E M ++ A+++N K P T+ ++NKK
Sbjct: 37 DDAIEADSEGDAEPCDKENENDGESSVGTNMGWADAMAKVLN--KKTPESKPTILVKNKK 94
Query: 220 MELEKQLAKLEEGIKVFSRPK 158
+E EK+ K E K+ R K
Sbjct: 95 LEKEKEKLKQERLEKIKQRDK 115
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,091,564
Number of Sequences: 237096
Number of extensions: 1693111
Number of successful extensions: 5184
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5182
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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