Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14k08
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical ... 31 1.1
AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical ... 30 1.4
U00046-2|AAN65304.1| 860|Caenorhabditis elegans Temporarily ass... 30 1.9
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 30 1.9
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 30 1.9
AC006795-2|AAF59493.3| 421|Caenorhabditis elegans Hypothetical ... 30 1.9
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein. 30 1.9
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 30 1.9
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 29 2.5
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z70036-4|CAO78724.1| 733|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 29 2.5
AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 29 2.5
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 29 3.3
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 29 3.3
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 3.3
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 3.3
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 3.3
Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical p... 29 4.4
Z92809-2|CAB07271.1| 628|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical p... 29 4.4
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 29 4.4
U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF016684-13|AAB66203.1| 470|Caenorhabditis elegans Hypothetical... 28 5.8
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 28 7.7
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 28 7.7
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z70036-3|CAA93876.1| 757|Caenorhabditis elegans Hypothetical pr... 28 7.7
U49956-8|AAA93436.1| 765|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical ... 28 7.7
>AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical
protein C18E3.6 protein.
Length = 457
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 298 NSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIKVF 170
+ FA LVNDL+K V K +N+K E + LE + F
Sbjct: 94 DEFATLVNDLSKEIVAFSDFKEKNRKSEFYNHICGLEAAVGGF 136
>AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical
protein Y45G5AM.7 protein.
Length = 433
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = -1
Query: 433 KYLRERKEQTQKDSEVVSDSDNIQCP-PGHVTLPDNERKETLRMLRNSFAELVNDLNK-L 260
++L+ERKE T+K + ++++ + + K+ + + F+ VN N +
Sbjct: 244 QFLKERKESTEKIELIQKEAEDYRKRIEEDIRNRQQRHKKEVDAHQEKFSATVNHQNAVI 303
Query: 259 PVKTDTLKMRNKKM-ELEKQLAKLEEGIK 176
T T+K + ++ EL+ QL K E IK
Sbjct: 304 EELTQTVKQKQSEIAELKDQLEKQESRIK 332
>U00046-2|AAN65304.1| 860|Caenorhabditis elegans Temporarily
assigned gene nameprotein 152, isoform c protein.
Length = 860
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 547 GDENIEIDRNRSRLNAILERKDSKDPYLPSGYQKGV 440
GD N+ +RS A+L S P+LP GY G+
Sbjct: 537 GDSNVLRIIDRSVFGALLPSSSSSHPFLPIGYLGGI 572
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily assigned
gene nameprotein 152, isoform a protein.
Length = 2560
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 547 GDENIEIDRNRSRLNAILERKDSKDPYLPSGYQKGV 440
GD N+ +RS A+L S P+LP GY G+
Sbjct: 2208 GDSNVLRIIDRSVFGALLPSSSSSHPFLPIGYLGGI 2243
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -1
Query: 616 KVKACGDTGLHRSPPPSQTPRKGGDENIEIDRNRSRLNAILERKDSKDPYLPSGYQK 446
++K D +SPP +QTPR G I ++ R +S DP P +K
Sbjct: 323 EIKEEEDVTPSQSPPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPLPPPPSKK 379
>AC006795-2|AAF59493.3| 421|Caenorhabditis elegans Hypothetical
protein Y50D4B.6 protein.
Length = 421
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 451 QKGVLPKYLRERKEQTQKDSEVVSDSDNIQCP 356
+KG L +YLR R+ KD V D+ + CP
Sbjct: 191 EKGDLVEYLRARRRYFNKDIVCVEDNGRLLCP 222
>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
Length = 2502
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 547 GDENIEIDRNRSRLNAILERKDSKDPYLPSGYQKGV 440
GD N+ +RS A+L S P+LP GY G+
Sbjct: 2150 GDSNVLRIIDRSVFGALLPSSSSSHPFLPIGYLGGI 2185
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 547 GDENIEIDRNRSRLNAILERKDSKDPYLPSGYQKGV 440
GD N+ +RS A+L S P+LP GY G+
Sbjct: 2332 GDSNVLRIIDRSVFGALLPSSSSSHPFLPIGYLGGI 2367
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -1
Query: 397 DSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 257
DS+ S+S + P +T+P+ R+E L + S E+ +++LP
Sbjct: 6 DSDSDSESQLDEIPSSGLTIPEERRRELLGQVGESDDEVSESISELP 52
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -1
Query: 397 DSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 257
DS+ S+S + P +T+P+ R+E L + S E+ +++LP
Sbjct: 6 DSDSDSESQLDEIPSSGLTIPEERRRELLGQVGESDDEVSESISELP 52
>Z70036-4|CAO78724.1| 733|Caenorhabditis elegans Hypothetical
protein T01B4.2b protein.
Length = 733
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -1
Query: 556 RKGGDENIEI-DRNRSRLNAILERKDSKDPYLPSGYQKGVLPKYLRERKEQTQKDSEVVS 380
R+ +EN E D NR + A + RK + D S K +L KY+R++ + S+ +
Sbjct: 7 REEYEENQEYSDDNRMQRRAPIRRKSALDDDQTSQAMK-LLEKYIRKKYRHSVIFSQDSA 65
Query: 379 DSDNIQCPPGH 347
D + P GH
Sbjct: 66 DIEQSSTPVGH 76
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/92 (27%), Positives = 43/92 (46%)
Frame = -1
Query: 454 YQKGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVN 275
+QK V+ K E E +K E+ + Q + E + L++ ++
Sbjct: 1332 FQKEVIEKAEAELIETQEKYDELEQVYEQSQ----QAQNSNKELIHVVENLKSQMGQIQQ 1387
Query: 274 DLNKLPVKTDTLKMRNKKMELEKQLAKLEEGI 179
D +KL TD + ++ +K+ELEK + KLE I
Sbjct: 1388 DRDKL--MTDLVTVQAEKLELEKIIQKLEVDI 1417
>AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/105 (21%), Positives = 47/105 (44%)
Frame = -1
Query: 469 YLPSGYQKGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSF 290
Y P K ++ Y++ R+E K+S+ +D +NI+ V P E + L+
Sbjct: 8 YDPKNRNK-IVQTYIKNRREHKFKNSQERTDLENIEDHRIDVFKPILESNKKLQ------ 60
Query: 289 AELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLEEGIKVFSRPKV 155
E++++ NK+ + K K++ +E+ + +P V
Sbjct: 61 EEIIDEKNKIVETLNNFKPSYKQLSIEQPKTPSNNKQSLIKKPSV 105
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Frame = -1
Query: 433 KYLRERKE-QTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 257
KY ER E Q + + ++ D+D +TL + RM+ + AEL ++L
Sbjct: 375 KYDLERLENQLRSELDLEHDADIDIEIDNAITLKIRGMSDKARMIAKNCAELQSNLRTAQ 434
Query: 256 -----VKTDTLKMRNKKMELEKQLAKLEEGIK 176
++ + ++N+K++LEK++ +L+ IK
Sbjct: 435 EAATKIEVEMKTLQNEKVKLEKEVEQLKFKIK 466
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 226 KKMELEKQLAKLEEGIKVFSRPKVFVKIGE 137
KK E+E Q+ K E K+F R +F K+ E
Sbjct: 928 KKAEMEVQMMKKELDQKIFHRKSLFKKVQE 957
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Frame = -1
Query: 433 KYLRERKE-QTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 257
KY ER E Q + + ++ D+D +TL + RM+ + AEL ++L
Sbjct: 361 KYDLERLENQLRSELDLEHDADIDIEIDNAITLKIRGMSDKARMIAKNCAELQSNLRTAQ 420
Query: 256 -----VKTDTLKMRNKKMELEKQLAKLEEGIK 176
++ + ++N+K++LEK++ +L+ IK
Sbjct: 421 EAATKIEVEMKTLQNEKVKLEKEVEQLKFKIK 452
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 226 KKMELEKQLAKLEEGIKVFSRPKVFVKIGE 137
KK E+E Q+ K E K+F R +F K+ E
Sbjct: 914 KKAEMEVQMMKKELDQKIFHRKSLFKKVQE 943
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Frame = -1
Query: 433 KYLRERKE-QTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 257
KY ER E Q + + ++ D+D +TL + RM+ + AEL ++L
Sbjct: 361 KYDLERLENQLRSELDLEHDADIDIEIDNAITLKIRGMSDKARMIAKNCAELQSNLRTAQ 420
Query: 256 -----VKTDTLKMRNKKMELEKQLAKLEEGIK 176
++ + ++N+K++LEK++ +L+ IK
Sbjct: 421 EAATKIEVEMKTLQNEKVKLEKEVEQLKFKIK 452
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 226 KKMELEKQLAKLEEGIKVFSRPKVFVKIGE 137
KK E+E Q+ K E K+F R +F K+ E
Sbjct: 914 KKAEMEVQMMKKELDQKIFHRKSLFKKVQE 943
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 448 KGVLPKYLRERKEQTQKDSE-VVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVND 272
+G L K L E + ++K+ + VS PG LP +E LR +RN+F ND
Sbjct: 487 QGALKK-LHEMAQDSEKNVDGTVSIKRTRSLSPGKTPLPPSE---ALRAVRNTFRNKDND 542
Query: 271 LNKLPVK 251
+ +L K
Sbjct: 543 IQQLERK 549
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 448 KGVLPKYLRERKEQTQKDSE-VVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVND 272
+G L K L E + ++K+ + VS PG LP +E LR +RN+F ND
Sbjct: 560 QGALKK-LHEMAQDSEKNVDGTVSIKRTRSLSPGKTPLPPSE---ALRAVRNTFRNKDND 615
Query: 271 LNKLPVK 251
+ +L K
Sbjct: 616 IQQLERK 622
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 448 KGVLPKYLRERKEQTQKDSE-VVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVND 272
+G L K L E + ++K+ + VS PG LP +E LR +RN+F ND
Sbjct: 560 QGALKK-LHEMAQDSEKNVDGTVSIKRTRSLSPGKTPLPPSE---ALRAVRNTFRNKDND 615
Query: 271 LNKLPVK 251
+ +L K
Sbjct: 616 IQQLERK 622
>Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 28.7 bits (61), Expect = 4.4
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Frame = -1
Query: 577 PPPSQTPRKGGDENIEIDR-----NRSRLNAILERKDSKDPYLPS-----GYQKGVLPKY 428
PP + TP+ DE +++D N R L+R ++ Y PS + + L K+
Sbjct: 51 PPTTTTPKLHHDETLDLDATFDQPNLKRRRVHLDRSSPENQY-PSEDSIYEFTQFTLQKW 109
Query: 427 LRE--RKEQTQKDSEVVS--DSDNI---QCPPGHVTLPDNERKETLRMLRNSFAELVNDL 269
E R+++ +K V + +N ++ +P E LR R+ F + ++
Sbjct: 110 EHEESRRQEKRKRKRVAERIERENYVHNAMENFNLNMPSVSDVEKLRRERDQFKK---EM 166
Query: 268 NKLPVKTDTLKMRNKKMELEKQ 203
K K + L+ R +++E+EK+
Sbjct: 167 EKYRSKCEKLEKRCEQLEMEKK 188
>Z92809-2|CAB07271.1| 628|Caenorhabditis elegans Hypothetical
protein R17.2 protein.
Length = 628
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 697 TIESXLSQKLTESTKLTVLYPKKEDDGKVKACGDTGLHRSP 575
T E + T T L ++ K GK+ CG+T LH +P
Sbjct: 435 TSEESKERFSTRPTVLQIVVLKDSRTGKLLVCGNTHLHHNP 475
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
F36F2.3a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 4.4
Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Frame = -1
Query: 544 DENIEIDRNRSRLNAILERKDSKDPYLPSGYQKGVLPKYLRERKEQTQKDSEVVS-DSDN 368
D E+ + R + R D +D +++ ++RK++ ++D E + DSD
Sbjct: 880 DRKEELPKESDRRDRKDRRHDDEDDRKERRHERDSQKIDEQDRKKERKRDRETEAYDSDK 939
Query: 367 IQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAKLE 188
+Q P V D +R + R+ + + + ++ + K+ + EK++ K
Sbjct: 940 LQAPKTKVKREDKKRDDRKDYERDRERRKDDYEKEKSKRKESDRDNEKEKQREKEVEKEH 999
Query: 187 E 185
E
Sbjct: 1000 E 1000
>Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 28.7 bits (61), Expect = 4.4
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Frame = -1
Query: 577 PPPSQTPRKGGDENIEIDR-----NRSRLNAILERKDSKDPYLPS-----GYQKGVLPKY 428
PP + TP+ DE +++D N R L+R ++ Y PS + + L K+
Sbjct: 51 PPTTTTPKLHHDETLDLDATFDQPNLKRRRVHLDRSSPENQY-PSEDSIYEFTQFTLQKW 109
Query: 427 LRE--RKEQTQKDSEVVS--DSDNI---QCPPGHVTLPDNERKETLRMLRNSFAELVNDL 269
E R+++ +K V + +N ++ +P E LR R+ F + ++
Sbjct: 110 EHEESRRQEKRKRKRVAERIERENYVHNAMENFNLNMPSVSDVEKLRRERDQFKK---EM 166
Query: 268 NKLPVKTDTLKMRNKKMELEKQ 203
K K + L+ R +++E+EK+
Sbjct: 167 EKYRSKCEKLEKRCEQLEMEKK 188
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = -1
Query: 436 PKYLRERKEQTQKDSEVVSDSDNIQCPPGHV----TLPDNERKETLRMLRNSFAELVNDL 269
PKYL E+ + K + + D PP + LPD+ E L ++ N FA L D+
Sbjct: 104 PKYLSEKILKKPKSRKKENGGDG-PAPPNKILFCTNLPDSATAEMLEIMFNQFAGL-KDI 161
Query: 268 NKLP 257
+P
Sbjct: 162 RMVP 165
>U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical
protein F07C3.3 protein.
Length = 791
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = -1
Query: 550 GGDENIEIDRNRSRLNAILERKDSKDPYLPSGYQKGVLPKYLRERKEQ-----TQKDSEV 386
G D+NI+ + R L ++ LP+ Y + ++P +L ER Q QKD
Sbjct: 128 GDDDNIKTEIERDPLLTHHPFDNTCKFPLPNSYAEDIIPFHLSERMRQLKCEVKQKDYAT 187
Query: 385 VSDSDNIQCPPGHVTLPDNER 323
+ I P V P ER
Sbjct: 188 MDSEGYIYVHPHFVDWPRLER 208
>AF016684-13|AAB66203.1| 470|Caenorhabditis elegans Hypothetical
protein F45C12.3 protein.
Length = 470
Score = 28.3 bits (60), Expect = 5.8
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Frame = -1
Query: 493 ERKDSKDPYLPSGYQKGVLPKYLRERKE----QTQKDSEVVSDSDNIQCPPGHVTLPDNE 326
E K K+P +K P L K+ +TQ D+E ++ I+ P V L + E
Sbjct: 303 EDKKLKEPGEHEETEKLEKPNKLENSKKFMELETQDDNEKFEETKEIKTPMEPVKLEETE 362
Query: 325 RKETLRMLRNSFAELVNDLNKLPVKTDTLKMRNKKMELEKQLAK-LEEG 182
+ E L+ F EL LN+L V + + + E + +K L++G
Sbjct: 363 KLEKPSELK-EFNELA-QLNELKVLSQPKRSEKPEKPNEYERSKNLDDG 409
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 421 ERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 257
+R + D + S D I P +T+P+ R+E L + S E+ +++LP
Sbjct: 539 KRSSSVRPDPDEESQLDEI--PSSGLTIPEERRRELLGQVGESDDEVSESISELP 591
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 421 ERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 257
+R + D + S D I P +T+P+ R+E L + S E+ +++LP
Sbjct: 539 KRSSSVRPDPDEESQLDEI--PSSGLTIPEERRRELLGQVGESDDEVSESISELP 591
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 421 ERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 257
+R + D + S D I P +T+P+ R+E L + S E+ +++LP
Sbjct: 539 KRSSSVRPDPDEESQLDEI--PSSGLTIPEERRRELLGQVGESDDEVSESISELP 591
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 421 ERKEQTQKDSEVVSDSDNIQCPPGHVTLPDNERKETLRMLRNSFAELVNDLNKLP 257
+R + D + S D I P +T+P+ R+E L + S E+ +++LP
Sbjct: 539 KRSSSVRPDPDEESQLDEI--PSSGLTIPEERRRELLGQVGESDDEVSESISELP 591
>Z70036-3|CAA93876.1| 757|Caenorhabditis elegans Hypothetical
protein T01B4.2a protein.
Length = 757
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -1
Query: 526 DRNRSRLNAILERKDSKDPYLPSGYQKGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGH 347
D NR + A + RK + D S K +L KY+R++ + S+ +D + P GH
Sbjct: 42 DDNRMQRRAPIRRKSALDDDQTSQAMK-LLEKYIRKKYRHSVIFSQDSADIEQSSTPVGH 100
>U49956-8|AAA93436.1| 765|Caenorhabditis elegans Hypothetical
protein M03A1.6a protein.
Length = 765
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = -1
Query: 589 LHRSPPPSQTPRKGGDENIEIDRNRSRLNAILERK-------DSKDPYLPSGYQKGVLPK 431
+ +SPP S TP D N I +SR ++ + ++ + L + Y+ + K
Sbjct: 1 MEKSPPTSPTPIPSIDSNFMISPKKSRSKSVPNARKILNDLVETTERNLEAPYRSIMWQK 60
Query: 430 YLRERKEQTQ-KDSEV 386
Y+ +R + T+ K SEV
Sbjct: 61 YIFDRPKVTELKCSEV 76
>AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical
protein F56A11.6 protein.
Length = 442
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = -1
Query: 634 KKEDDGKVKACGDTGLHRSPPPSQTPRKGGDENIEIDRNRSRLNAILERKDSKD 473
++E+ + + + R S++PRK ++++ D+ RS + RKD +D
Sbjct: 264 RREERSRSRQDRERDRSRGGEKSRSPRKSHQKSVDRDKTRSDKDRSRSRKDRED 317
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,223
Number of Sequences: 27780
Number of extensions: 293725
Number of successful extensions: 1104
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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