Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k08
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.8  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 580 SPPPSQTPRKGGDENIEIDRNRSRLNAI 497
           SPPP QTP    +      R   R N++
Sbjct: 393 SPPPRQTPPSRKESGRRRRRRTPRYNSV 420


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 232 RNKKMELEKQLAKLEEGIKVFSRPKVFVKIGE*YDRVVVDL 110
           RNKK +L K++ + E          VFV++ +  D + V L
Sbjct: 431 RNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFL 471


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/35 (20%), Positives = 19/35 (54%)
 Frame = -1

Query: 490 RKDSKDPYLPSGYQKGVLPKYLRERKEQTQKDSEV 386
           ++  + P     YQ+ ++ KYL+++  Q  + + +
Sbjct: 236 QQQQQQPLTQQQYQQQIVGKYLQQQAGQQDQQANI 270


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 463 PSGYQKGVLPKYLRERKEQTQKDSEVVSDSDNIQCPPGHVT 341
           P+ +  GV   ++  + E      E     DNI+C P  +T
Sbjct: 208 PTDFSMGVKNNHVSSKVEGNGVHEENSPLEDNIKCEPLELT 248


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 477 KILTCLQATKKEFYQNI 427
           KIL  L AT ++F QN+
Sbjct: 85  KILQVLGATPRDFLQNL 101


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = -1

Query: 580  SPPPSQTPRKGGDENIEIDRNRSRLNAILERKDSKDPYLPSGY 452
            SP P   P +  D+N     +    N I E +  +D  +   Y
Sbjct: 1856 SPEPPPPPPRNHDQNNSSFNDSKESNEISEAECDRDQLVNRNY 1898


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 477 KILTCLQATKKEFYQNI 427
           KIL  L AT ++F QN+
Sbjct: 85  KILQVLGATPRDFLQNL 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,404
Number of Sequences: 438
Number of extensions: 3206
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)