Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k07
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    27   2.3  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    26   5.4  
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.1  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.4  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   9.4  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    25   9.4  

>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 449 SFHPHNFSVHIIIYLYLKN*AVWYATFAFLVVKRRIIIFDI 571
           SF PHN   + +  L++ +   W+A+ A   V  RI +F I
Sbjct: 93  SFLPHNILQNGLNTLHIWSGLPWWASIAACAVAMRIAVFPI 133


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
 Frame = +3

Query: 375 TLFHRISSRVI*SLLITVSNRST----SAPFIHIIFQ 473
           T+F  +SS+++ ++L+T+ N+      +AP + + FQ
Sbjct: 88  TIFFAVSSQIVFAILVTILNKQALNIINAPLLMLSFQ 124


>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 323 ISYVQRLCFIFLRLCTFTDTKQLINHRYYTYQSEETLKSQIKAIHT 186
           +S   R+  +FL   T + +  +I+    +Y SE TLK  + +++T
Sbjct: 63  LSLGTRMSMVFLACTTTSLSTAIIHWAAKSYVSEATLKGNVLSLNT 108


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 254 INHRYYTYQSEETLKSQIKAIHTTFRKL 171
           I+HR  T  +++TLKSQ+    ++ +KL
Sbjct: 76  ISHRLSTLSNKKTLKSQLDRFLSSSKKL 103


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 290 LRLCTFTDTKQLINHRYYTYQSEETLKSQIKAIH 189
           L +CT T   +L + R+Y  Q+EE   S  + IH
Sbjct: 142 LAVCTETGALELFDSRFYDRQNEENQPS-ARRIH 174


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 323 ISYVQRLCFIFLRLCTFTDTKQLINHRYYTYQSEETLKSQIKAIHTT 183
           I+ +Q++C +F    T  DT+  I   +Y Y S E     + A   T
Sbjct: 158 INGLQQICVVFKHKQTSQDTRFQILEFFYFYLSPEPYSIDVIAYRKT 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,764
Number of Sequences: 5004
Number of extensions: 57290
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)