Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k07
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522...    28   7.4  
02_05_0978 - 33242938-33242988,33243729-33243911,33244458-332445...    28   9.7  

>02_05_1158 -
           34550049-34551241,34551354-34551521,34551847-34552231,
           34552245-34552772
          Length = 757

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -3

Query: 622 LNSDVCGMPLLL*SKYINVKNDYSSFYNKKSEGSIPYSLIFQI 494
           LNS  C    L+  K+I+    Y +++N+  +  +P  L + I
Sbjct: 209 LNSTACNYMFLVEDKWIDTTYSYRAYFNRTDDFDVPVVLDWAI 251


>02_05_0978 -
           33242938-33242988,33243729-33243911,33244458-33244520,
           33244656-33246083
          Length = 574

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 242 YYTYQSEETLKSQIKAIHTTFRKLMMTFFLNCFSNFNSDQRVR 114
           Y+TY  E  +K +   + T   +  + +FLNC S+   ++R+R
Sbjct: 397 YFTYSLESRIKPRYMRVSTKGIRCSLDWFLNC-SDQRFEERMR 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,765,123
Number of Sequences: 37544
Number of extensions: 290137
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)