Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k06
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0019 + 403078-404211                                             29   1.9  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    29   1.9  
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251...    29   2.5  
04_03_0150 + 11877714-11878487,11880928-11881245                       28   5.8  

>09_01_0019 + 403078-404211
          Length = 377

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 235 RQHCREHQKEFQRHSSTQRGRS 300
           R+H R+ +K+  RH S+ RGRS
Sbjct: 207 RKHSRDEEKKTSRHRSSSRGRS 228


>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 259  FDALYNADACTLTSCPTEAGKTQTLDFSL 173
            F  LYN D   L + PT +GKT   +F++
Sbjct: 1370 FTVLYNTDDSVLVAAPTGSGKTICAEFAI 1398


>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
            30326409-30326798,30326896-30330060
          Length = 2144

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 259  FDALYNADACTLTSCPTEAGKTQTLDFSL 173
            F A YN+D   L + PT +GKT   +F++
Sbjct: 1339 FTASYNSDDSVLVAAPTGSGKTICAEFAI 1367


>04_03_0150 + 11877714-11878487,11880928-11881245
          Length = 363

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 471 NSTSSPQGYAGKWTPARVL*TRSELTPVLTVDCATSRKGKTRRFLSTLHHNS 316
           N + SP+G      PAR    RS  TP    + A +     R   S+++HNS
Sbjct: 16  NKSQSPRGACASTEPARTQAKRSRPTPAGGNEQAVAVVVPRRSLPSSINHNS 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,411,478
Number of Sequences: 37544
Number of extensions: 316404
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)