Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14k04
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 58 2e-09
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 31 0.13
SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 29 0.54
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 28 1.2
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 27 3.8
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 26 5.0
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc... 26 5.0
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 26 6.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.6
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 8.8
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 25 8.8
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 8.8
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 57.6 bits (133), Expect = 2e-09
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 6/156 (3%)
Frame = -2
Query: 475 GWWKYEFCYGKHVLQYHI------DRAGEKTTVMLGRFDEKAHLDWIKDNKGKAPKPIDQ 314
G+W Y++ YG+HV QYH+ D+ +LG +++N A ++
Sbjct: 132 GYWTYDYVYGQHVRQYHLEPQQGSDKVLANPMYILGTAPNTQTKKNLEEN--WAIGFVEG 189
Query: 313 RISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHYILGVESPLI 134
+ + + NG +CD T RPR + +C NS +P +++ Y E +C Y + + P +
Sbjct: 190 KAYLQTTFRNGTMCDITKRPRHVILSYECSTNSDTP-EITQY-QEVSSCAYSMTIHVPGL 247
Query: 133 CDILPLADENGLIKTVREALEKKKERSEAVDDVSDQ 26
C + + + KE+S VD Q
Sbjct: 248 CSLPAFKIQEDIPSEKIVCYNVIKEKSNEVDHKDSQ 283
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 31.5 bits (68), Expect = 0.13
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 433 QYHIDRAGEKTTVMLGRFDEKAHLDWIKDNKGKAPKPIDQRISISHFY 290
QYH D +K + +G + + WI KA K ++++ S +H Y
Sbjct: 23 QYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFNHEY 70
>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 29.5 bits (63), Expect = 0.54
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -2
Query: 217 SSSPAQVSLYLLEPKTCHYILGVESPLICDILPLADENGLIKTVREA--LEKKKERSEAV 44
+SSP L +++ K L ++ + I+P D N L+KT R+ E+ + V
Sbjct: 17 TSSPEAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTTRQLGNYSLPDEKPDLV 76
Query: 43 DDVSDQECTK 14
DD SD+ K
Sbjct: 77 DD-SDEVLLK 85
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 581 PTEASTERRQAPSANHG*FSRTSLP*RGKLSKWWYRL 471
PT A+T + AP N G FS P L+KW +L
Sbjct: 580 PTSATTSKLMAPMDNIGKFSGFERPPETLLNKWRQQL 616
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.8
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = -2
Query: 292 YSNGDVCDKTGRPRQTEVKLKC-LENSSSPAQVSLYLLEPKTCHYILGVESPLIC--DIL 122
Y NG C G R V ++C +EN + +LE + C Y++ ++SP C D L
Sbjct: 425 YENGQSC-WNGPHRSAIVTVECGVENEI------VSVLEAQKCEYLIKMKSPAACSPDQL 477
Query: 121 PLADENGLIKTVREALEKKKERSEAVDDV 35
+ N A+ +++ +VD++
Sbjct: 478 KQSLLNTQNSANENAVNGMEDKESSVDEL 506
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.2 bits (55), Expect = 5.0
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Frame = -2
Query: 712 MDNADQTVKDILAVLKVGKFEKDGETHLKF--ELHPLGDDEDMTSDPPKPVPSVDKRPPP 539
M N + DI V G +L+ +L G + +S P+P ++ P
Sbjct: 306 MRNVPIHIYDIYNGKNVSSCNPSGSEYLQHASKLENSGIHQSKSSVFPQPASAMKPMASP 365
Query: 538 ITDDSPVRAFL-NGENCLNGGTGWWKYEFCYGKH 440
+ + +L NG++ NG T F YG+H
Sbjct: 366 MLPNVNSMPYLSNGDHNNNGNTSSPVSRFSYGQH 399
>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 399 VVFSPARSMWYWSTCFP*QNSYFHQPVPPFRQFSPLRKARTGESSV 536
V+FSP+ +W S FP YF + S ++ T ES V
Sbjct: 149 VIFSPSALLWDQSINFPRTTRYFTSQGLQITKKSIIKDVETPESYV 194
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 341 RESSETYRSKNFNIAFLFERRRLRQNRPTP 252
RES +T NF +A++FE +R + + P+P
Sbjct: 324 RESGDT-ACLNFALAWMFEFKRSQYSNPSP 352
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 580 PPKPVPSVDKRPPPITDDSPV 518
PP+ PS ++PPP++ V
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAV 385
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 580 PPKPVPSVDKRPPPITDDSP 521
PP P+PS D P P+ +P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAP 1041
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2
Query: 214 SSPAQVSLYLLEPKTCHYILGVESP 140
SSP SL+ PK H LG ESP
Sbjct: 105 SSPLSSSLHRSSPKRPHDSLGEESP 129
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 586 SDPPKPVPSVDKRPPPIT 533
S P KP+PS PPP++
Sbjct: 215 SPPEKPIPSFVLSPPPVS 232
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 574 KPVPSVDKRPPPITDDSPV 518
K +PS+ K+P P+ D +P+
Sbjct: 496 KTLPSIGKKPIPLLDPNPI 514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,927
Number of Sequences: 5004
Number of extensions: 68763
Number of successful extensions: 224
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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