Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14k04
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0916 - 25932934-25933090,25933170-25933276,25933356-259334... 83 3e-16
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 35 0.080
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 33 0.24
01_06_0146 + 26969011-26969995,26970878-26970930 32 0.43
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 31 0.98
03_03_0017 - 13774877-13775005,13775333-13775368,13776147-137762... 30 2.3
02_01_0736 - 5490671-5491813 30 2.3
03_01_0037 - 335646-335855,336480-336686,336962-337129,337377-33... 29 3.0
05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570 29 4.0
02_05_0497 - 29502012-29502101,29502128-29502197,29502302-295024... 29 4.0
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476... 29 5.2
09_02_0543 + 10427321-10428315,10428440-10429154 29 5.2
02_05_1277 - 35408097-35409080 29 5.2
04_01_0120 + 1241241-1241321,1242827-1242857,1242999-1243612,124... 28 6.9
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 28 9.2
>06_03_0916 -
25932934-25933090,25933170-25933276,25933356-25933422,
25933509-25933624,25933873-25933944,25934055-25934255,
25934652-25934728,25935131-25935230
Length = 298
Score = 82.6 bits (195), Expect = 3e-16
Identities = 46/130 (35%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Frame = -2
Query: 499 ENCLNGGTGWWKYEFCYGKHVLQYHIDRAGEKT--TVMLGRFDEKAHLDWIKDNKGKAPK 326
+ C GWW YEFCY + Q H++ GEK +LG +D A + ++ +
Sbjct: 121 DQCFYRHEGWWSYEFCYYGKIRQVHVE--GEKVIQEYVLGEYDADATDAYYENQTSDSAD 178
Query: 325 PIDQRISIS-----HFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHY 161
D I S H Y+NG VCD T PR+TEV+ C S P V + E +C Y
Sbjct: 179 EDDNLIDTSKRYHVHLYTNGTVCDLTDMPRETEVRFVC----SEPTVVISSIKEISSCKY 234
Query: 160 ILGVESPLIC 131
+L V+SP++C
Sbjct: 235 VLTVQSPMLC 244
>01_05_0660 -
24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 34.7 bits (76), Expect = 0.080
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 245 GLPGSAGFVANVAVRIEMRY*NSLIYRFRSFPFIILDPVQMRFLIKSTQHYGGLLAGAIY 424
G PG AN+ I + NS +Y FR+F +++ + M ++ + +G IY
Sbjct: 510 GAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIY 569
Query: 425 V 427
+
Sbjct: 570 M 570
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 292 YSNGDVCDKTGRPRQTEVKLKC-LENSSSPAQVSLYLLEPKTCHYILGVESPLICD 128
+SNGD C G R +V+L+C L N + EP C Y+ + +P +CD
Sbjct: 543 FSNGDRC-WNGPDRSLKVRLRCGLNNELNGVD------EPSRCEYVAVLSTPALCD 591
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 613 PLGDDEDMTSDPPKPVPSVDKRPPPITDDSP 521
P D +D S PP P P PPPI+ +P
Sbjct: 12 PATDGDDAQSHPPPPTPHPATDPPPISPQNP 42
>08_02_0520 -
18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 31.1 bits (67), Expect = 0.98
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 308 NSLIYRFRSFPFIILDPVQMRFLIKSTQHYGGLLAGAIYV 427
N +YRFR+F +++ + M +++ H+ G +Y+
Sbjct: 569 NMFVYRFRAFQLLVITIIVMTLFLRTNMHHETRTDGIVYL 608
>03_03_0017 -
13774877-13775005,13775333-13775368,13776147-13776227,
13776935-13777006,13777136-13777219,13777323-13777376,
13777496-13777572,13777949-13778000,13778121-13778207,
13778466-13778520,13778600-13778700,13778800-13778988,
13779561-13779629,13779954-13780056,13780167-13780225,
13780548-13780685,13780803-13780895,13780972-13781043,
13781503-13781601,13781792-13781893
Length = 583
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Frame = -2
Query: 610 LGDDEDMTSDPPKPVPSVDKRPPPITDDSPVRAFLN---GENCLNGGTGWWKYEFCYGKH 440
+G + DPP PVP K + D+ R ++ + GG W+ Y
Sbjct: 273 IGSPQPTLPDPPLPVPENKKILVWVGDELLPRDSAKVSVFDSVVQGGDAVWEGLRIYDGK 332
Query: 439 V--LQYHIDRAGEKTTVMLGRFDEKAHLDWIKD 347
V L H+DR + M F DWIKD
Sbjct: 333 VFKLDEHLDRLFDSAKAM--AFSNVPSRDWIKD 363
>02_01_0736 - 5490671-5491813
Length = 380
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 715 LMDNADQTVKDILAVLKVGKFEKDGETHLKFELHPLGDDEDMTSDPPKPV 566
L D+ TV+D L + +D +H + L+ + DD +S P PV
Sbjct: 25 LDDSHLMTVRDPLPAAYIAVCRRDWYSHSYYRLYKVEDDSSSSSSPSSPV 74
>03_01_0037 -
335646-335855,336480-336686,336962-337129,337377-337973
Length = 393
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 580 PPKPVPSVDKRPPPITDDSPVRAF 509
PP+P+PS+ ++PP T R F
Sbjct: 4 PPRPIPSIHRQPPKPTTTHVARCF 27
>05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570
Length = 378
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 610 LGDDEDMTS-DPPKPVPSVDKRPPPITDDSPVRAFLNGENCLNGGTGW 470
+G ++D S DPP+P P PP D P A L GE GG W
Sbjct: 154 VGQEQDEHSPDPPEPSPPPPPPPPASKSDHP--APLYGEG--GGGFSW 197
>02_05_0497 -
29502012-29502101,29502128-29502197,29502302-29502411,
29502530-29502641,29503341-29503498,29503592-29503807,
29504127-29504354,29504722-29504801,29504886-29505056,
29505179-29505281,29505369-29505551,29506313-29506813,
29506935-29507100,29507517-29507566,29508047-29508127,
29508291-29508398,29508874-29508939,29509053-29509109,
29509442-29509507,29509917-29510006,29510850-29510975,
29511681-29511717,29512192-29512250,29512562-29512615,
29513294-29513428,29513542-29513612,29513720-29513957
Length = 1141
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 613 GAVRISNGFRRPSQIFRLSKLQVYP 687
G RI NG RRP RL ++++YP
Sbjct: 849 GPFRIINGVRRPIPFIRLLEVELYP 873
>10_08_0680 -
19846481-19846767,19847192-19847379,19847467-19847666,
19847799-19848060,19848652-19848758
Length = 347
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 280 DVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLEP 176
D C+KTG R+T V+ + PA S Y EP
Sbjct: 40 DECEKTGSLRETSVRHCQVPTDDHPADKSWYAHEP 74
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 595 DMTSDPPKPVPSVDKRPPPITDDSP 521
DM PP P P PPP D +P
Sbjct: 42 DMPPPPPTPAPQSSPAPPPAPDMTP 66
>02_05_1277 - 35408097-35409080
Length = 327
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = -2
Query: 709 DNADQTVKDILAVLKVGKFEKDGETHLKFELH---PLGDDEDMTSDPPKPVPSV 557
+ A T A +K+G T + EL P DE+ S PP P P V
Sbjct: 245 ERAATTAATTAATATAPDTKKEGSTSINLELDLNLPAPSDEESVSPPPPPPPPV 298
>04_01_0120 +
1241241-1241321,1242827-1242857,1242999-1243612,
1243726-1243796,1244233-1244478,1245267-1245393,
1245993-1246185,1246656-1247209
Length = 638
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 577 PKPVPSVDKRPPPITDDSPVRAFLNGENCLNGG 479
P P+P +PPP + P RA NG NC + G
Sbjct: 6 PPPLPDQLGQPPP-SPVPPARATPNGLNCRDSG 37
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 598 EDMTSDPPKPVPSVDKRPPPITDDSPVRAFLNGE 497
E++ + PP P P +R +D PV +FL +
Sbjct: 80 EEIRAPPPAPKPEALRRADSDDEDDPVESFLRAK 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,282,746
Number of Sequences: 37544
Number of extensions: 508406
Number of successful extensions: 2072
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2039
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -