Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14k04
(752 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-2138|AAF53149.1| 525|Drosophila melanogaster CG6766-PA... 172 5e-43
AY122233-1|AAM52745.1| 418|Drosophila melanogaster RE67845p pro... 95 1e-19
AE013599-3810|AAF47160.1| 81|Drosophila melanogaster CG13564-P... 32 0.73
AY061003-1|AAL28551.1| 461|Drosophila melanogaster HL01728p pro... 31 1.3
AE014296-1649|AAN11969.1| 461|Drosophila melanogaster CG3967-PE... 31 1.3
AE014296-1648|AAN11968.1| 461|Drosophila melanogaster CG3967-PD... 31 1.3
AE014296-1647|AAN11967.1| 461|Drosophila melanogaster CG3967-PC... 31 1.3
AE014296-1646|AAF50275.2| 461|Drosophila melanogaster CG3967-PA... 31 1.3
AE014298-2776|AAN09479.1| 608|Drosophila melanogaster CG32543-P... 31 1.7
AY051888-1|AAK93312.1| 503|Drosophila melanogaster LD37690p pro... 31 2.2
AE014297-4320|AAF56856.1| 503|Drosophila melanogaster CG11877-P... 31 2.2
AE014296-744|AAF47827.2| 505|Drosophila melanogaster CG11593-PA... 31 2.2
AE014296-656|AAN11565.1| 717|Drosophila melanogaster CG12010-PB... 31 2.2
AE014296-655|AAF47769.1| 736|Drosophila melanogaster CG12010-PA... 31 2.2
>AE014134-2138|AAF53149.1| 525|Drosophila melanogaster CG6766-PA
protein.
Length = 525
Score = 172 bits (418), Expect = 5e-43
Identities = 77/152 (50%), Positives = 99/152 (65%)
Frame = -2
Query: 547 PPPITDDSPVRAFLNGENCLNGGTGWWKYEFCYGKHVLQYHIDRAGEKTTVMLGRFDEKA 368
P PITD +P++ F++G+NCL GG GWWKYEFCYG+HV Q+H D+ E + LG F E+A
Sbjct: 338 PTPITDLTPLKDFISGKNCLTGGNGWWKYEFCYGRHVRQFHKDKTSE-VELFLGYFSEEA 396
Query: 367 HLDWIKDNKGKAPKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLY 188
H W N K + SI H Y G C++ G PR+ +VKL C ++S VS+Y
Sbjct: 397 HRAWSNANPDKGARRSGFTTSIWHHYGKGTHCEQIGVPREVDVKLTCTPVTNSGTAVSMY 456
Query: 187 LLEPKTCHYILGVESPLICDILPLADENGLIK 92
LLEPKTC YIL VESP ICD++ AD GL+K
Sbjct: 457 LLEPKTCQYILVVESPTICDLIHNADSQGLVK 488
Score = 56.4 bits (130), Expect = 4e-08
Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Frame = -2
Query: 541 PITDDSPVRAFLNGENCLNGGTGWWKYEFCYGKHVLQYHIDRAGEKTTVM---LGRF-DE 374
PIT P+ + L C +W YE C+G HV QYH +R G+ LG++ DE
Sbjct: 88 PITLLQPIFSALT---CTYRIEAYWSYEICHGHHVRQYHEEREGKNVKFQEYYLGKWTDE 144
Query: 373 KAHL---DWIKDNK-GKAPKPIDQRISISHF------YSNGDVCDKTGRPRQTEVKLKCL 224
K + W D K G PK +I + + YS+G +CD PR T V+ C
Sbjct: 145 KMEILTKAWQADIKAGVKPKYKSLKIDNTRYPYFEMEYSDGTMCDIINAPRTTMVRYVCY 204
Query: 223 ENSSSPAQVSLY-LLEPKTCHYILGVESPLICDILPLADE 107
+ + +Y E +C+Y + S +C I L E
Sbjct: 205 PHGKN----DIYSFKETSSCNYEAIILSSALCPIRALHAE 240
>AY122233-1|AAM52745.1| 418|Drosophila melanogaster RE67845p
protein.
Length = 418
Score = 94.7 bits (225), Expect = 1e-19
Identities = 38/74 (51%), Positives = 50/74 (67%)
Frame = -2
Query: 547 PPPITDDSPVRAFLNGENCLNGGTGWWKYEFCYGKHVLQYHIDRAGEKTTVMLGRFDEKA 368
P PITD +P++ F++G+NCL GG GWWKYEFCYG+HV Q+H D+ E + LG F E+A
Sbjct: 338 PTPITDLTPLKDFISGKNCLTGGNGWWKYEFCYGRHVRQFHKDKTSE-VELFLGYFSEEA 396
Query: 367 HLDWIKDNKGKAPK 326
H W N K +
Sbjct: 397 HRAWSNANPDKGAR 410
Score = 56.4 bits (130), Expect = 4e-08
Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Frame = -2
Query: 541 PITDDSPVRAFLNGENCLNGGTGWWKYEFCYGKHVLQYHIDRAGEKTTVM---LGRF-DE 374
PIT P+ + L C +W YE C+G HV QYH +R G+ LG++ DE
Sbjct: 88 PITLLQPIFSALT---CTYRIEAYWSYEICHGHHVRQYHEEREGKNVKFQEYYLGKWTDE 144
Query: 373 KAHL---DWIKDNK-GKAPKPIDQRISISHF------YSNGDVCDKTGRPRQTEVKLKCL 224
K + W D K G PK +I + + YS+G +CD PR T V+ C
Sbjct: 145 KMEILTKAWQADIKAGVKPKYKSLKIDNTRYPYFEMEYSDGTMCDIINAPRTTMVRYVCY 204
Query: 223 ENSSSPAQVSLY-LLEPKTCHYILGVESPLICDILPLADE 107
+ + +Y E +C+Y + S +C I L E
Sbjct: 205 PHGKN----DIYSFKETSSCNYEAIILSSALCPIRALHAE 240
>AE013599-3810|AAF47160.1| 81|Drosophila melanogaster CG13564-PA
protein.
Length = 81
Score = 32.3 bits (70), Expect = 0.73
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 592 MTSDPPKPVPSVDKRPPPITDDSPVRAFLNGENCLNGGTG 473
M+ +P KP S K PP +++++ + CL GG+G
Sbjct: 1 MSHEPQKPAKSAVKEPPVVSEETRTTDKCLADFCLKGGSG 40
>AY061003-1|AAL28551.1| 461|Drosophila melanogaster HL01728p
protein.
Length = 461
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = -2
Query: 703 ADQTVKDILAVLKVGKFEKDGETHLKFELHPLGDDEDMTSDPPKPVPSVDKRPPPITDDS 524
A+Q + LA L+ +E + E + E P + E PP P P PP
Sbjct: 300 AEQLQRQSLADLEANSYEPEPEVEPEPEPEPEPEPEPEVITPPSPPPKSHTPTPPSVRSP 359
Query: 523 PVRAFLNGEN 494
V + G+N
Sbjct: 360 EVAESIVGDN 369
>AE014296-1649|AAN11969.1| 461|Drosophila melanogaster CG3967-PE,
isoform E protein.
Length = 461
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = -2
Query: 703 ADQTVKDILAVLKVGKFEKDGETHLKFELHPLGDDEDMTSDPPKPVPSVDKRPPPITDDS 524
A+Q + LA L+ +E + E + E P + E PP P P PP
Sbjct: 300 AEQLQRQSLADLEANSYEPEPEVEPEPEPEPEPEPEPEVITPPSPPPKSHTPTPPSVRSP 359
Query: 523 PVRAFLNGEN 494
V + G+N
Sbjct: 360 EVAESIVGDN 369
>AE014296-1648|AAN11968.1| 461|Drosophila melanogaster CG3967-PD,
isoform D protein.
Length = 461
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = -2
Query: 703 ADQTVKDILAVLKVGKFEKDGETHLKFELHPLGDDEDMTSDPPKPVPSVDKRPPPITDDS 524
A+Q + LA L+ +E + E + E P + E PP P P PP
Sbjct: 300 AEQLQRQSLADLEANSYEPEPEVEPEPEPEPEPEPEPEVITPPSPPPKSHTPTPPSVRSP 359
Query: 523 PVRAFLNGEN 494
V + G+N
Sbjct: 360 EVAESIVGDN 369
>AE014296-1647|AAN11967.1| 461|Drosophila melanogaster CG3967-PC,
isoform C protein.
Length = 461
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = -2
Query: 703 ADQTVKDILAVLKVGKFEKDGETHLKFELHPLGDDEDMTSDPPKPVPSVDKRPPPITDDS 524
A+Q + LA L+ +E + E + E P + E PP P P PP
Sbjct: 300 AEQLQRQSLADLEANSYEPEPEVEPEPEPEPEPEPEPEVITPPSPPPKSHTPTPPSVRSP 359
Query: 523 PVRAFLNGEN 494
V + G+N
Sbjct: 360 EVAESIVGDN 369
>AE014296-1646|AAF50275.2| 461|Drosophila melanogaster CG3967-PA,
isoform A protein.
Length = 461
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = -2
Query: 703 ADQTVKDILAVLKVGKFEKDGETHLKFELHPLGDDEDMTSDPPKPVPSVDKRPPPITDDS 524
A+Q + LA L+ +E + E + E P + E PP P P PP
Sbjct: 300 AEQLQRQSLADLEANSYEPEPEVEPEPEPEPEPEPEPEVITPPSPPPKSHTPTPPSVRSP 359
Query: 523 PVRAFLNGEN 494
V + G+N
Sbjct: 360 EVAESIVGDN 369
>AE014298-2776|AAN09479.1| 608|Drosophila melanogaster CG32543-PA
protein.
Length = 608
Score = 31.1 bits (67), Expect = 1.7
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 646 DGETHLKFELHPLGDDEDMTSDPPK-PVPSVDKRPPPITDDSP 521
D + L+ EL+ + E S+PP VP+ ++ PPPIT +P
Sbjct: 281 DVDAELEEELNKISLGESSISEPPLLVVPTPEQTPPPITKITP 323
>AY051888-1|AAK93312.1| 503|Drosophila melanogaster LD37690p
protein.
Length = 503
Score = 30.7 bits (66), Expect = 2.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 379 DEKAHLDWIKDNKGKAPKPIDQRISISHF 293
D A+LDW+ DNK PK I+ S F
Sbjct: 300 DYTAYLDWLADNKDDVPKATANEITPSRF 328
>AE014297-4320|AAF56856.1| 503|Drosophila melanogaster CG11877-PA
protein.
Length = 503
Score = 30.7 bits (66), Expect = 2.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 379 DEKAHLDWIKDNKGKAPKPIDQRISISHF 293
D A+LDW+ DNK PK I+ S F
Sbjct: 300 DYTAYLDWLADNKDDVPKATANEITPSRF 328
>AE014296-744|AAF47827.2| 505|Drosophila melanogaster CG11593-PA
protein.
Length = 505
Score = 30.7 bits (66), Expect = 2.2
Identities = 23/68 (33%), Positives = 35/68 (51%)
Frame = -2
Query: 253 RQTEVKLKCLENSSSPAQVSLYLLEPKTCHYILGVESPLICDILPLADENGLIKTVREAL 74
R+T + L E+ SSP++ + + E T GV SPL D+LP A E ++K +
Sbjct: 19 RET-MSLHYAESESSPSESKMDISETPTDS--TGV-SPLADDVLPTAPEKNILKLEQAKQ 74
Query: 73 EKKKERSE 50
+ KE E
Sbjct: 75 DHDKEELE 82
>AE014296-656|AAN11565.1| 717|Drosophila melanogaster CG12010-PB,
isoform B protein.
Length = 717
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = -2
Query: 547 PPPITDDS---PVRAFLNG-ENCLNGGTGWWKYEFCYGKHVLQYHIDRAGEKTTVML 389
P + DDS P R ++ EN + GTGW++ C G + + + RAG +T L
Sbjct: 12 PLSLLDDSDLEPQRCYIPAWEN--STGTGWYRCHLCDGSYAVCWVTPRAGSETCCFL 66
>AE014296-655|AAF47769.1| 736|Drosophila melanogaster CG12010-PA,
isoform A protein.
Length = 736
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = -2
Query: 547 PPPITDDS---PVRAFLNG-ENCLNGGTGWWKYEFCYGKHVLQYHIDRAGEKTTVML 389
P + DDS P R ++ EN + GTGW++ C G + + + RAG +T L
Sbjct: 12 PLSLLDDSDLEPQRCYIPAWEN--STGTGWYRCHLCDGSYAVCWVTPRAGSETCCFL 66
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,774,345
Number of Sequences: 53049
Number of extensions: 815842
Number of successful extensions: 3040
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3017
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3437745267
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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