Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14k04
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-2|CAB60843.3| 534|Caenorhabditis elegans Hypothetical ... 149 2e-36
U23514-6|AAC46544.2| 816|Caenorhabditis elegans Hypothetical pr... 54 1e-07
Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical p... 31 0.66
AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl cholin... 31 0.66
Z47358-10|CAA87438.1| 507|Caenorhabditis elegans Hypothetical p... 30 1.5
Z47356-9|CAA87420.1| 507|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z79600-12|CAB70221.2| 415|Caenorhabditis elegans Hypothetical p... 29 2.7
Z75540-7|CAB70215.2| 415|Caenorhabditis elegans Hypothetical pr... 29 2.7
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 29 4.7
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 29 4.7
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 29 4.7
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 28 6.2
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 28 6.2
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 28 8.2
U58758-2|AAB93428.1| 424|Caenorhabditis elegans Hypothetical pr... 28 8.2
U56966-4|AAA98719.2| 906|Caenorhabditis elegans Ace(angiotensin... 28 8.2
U56966-3|AAU05584.1| 332|Caenorhabditis elegans Ace(angiotensin... 28 8.2
>AL132876-2|CAB60843.3| 534|Caenorhabditis elegans Hypothetical
protein Y105E8A.2 protein.
Length = 534
Score = 149 bits (361), Expect = 2e-36
Identities = 68/164 (41%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Frame = -2
Query: 520 VRAFLNGENCLNGGTGWWKYEFCYGKHVLQYHIDRAGEKTTVMLGRFDEKAHLDWIK-DN 344
V L GE+C+ GGTGWWKYEFCYGKHV+Q+H D G+++ ++LG FDE H +W+K D
Sbjct: 343 VNRILTGEDCIVGGTGWWKYEFCYGKHVIQFHEDANGQRSDILLGVFDEVVHKEWVKLDR 402
Query: 343 KGK-APKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLEPKTC 167
+ A + +Q IS Y+ GD+CD+TG EV+++C S S++L EP+TC
Sbjct: 403 HARGAIQGNNQIDQISQIYAKGDICDETG-AHNVEVRIRCATADHSALSFSMHLTEPRTC 461
Query: 166 HYILGVESPLICDILPLADENGLIKTVREALEKKKERSEAVDDV 35
Y+L ++S C+ L AD+ GLI+ + A + + A V
Sbjct: 462 QYVLTIDSERFCEPLQFADDYGLIELTQVASSSQSAAAAAAAPV 505
Score = 58.0 bits (134), Expect = 7e-09
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 11/125 (8%)
Frame = -2
Query: 472 WWKYEFCYGKHVLQYHIDR--AGE--KTTVMLGRFDEKAHLDWIKDNKGKAPKPIDQRIS 305
+W Y+ C+G++V+QYH D+ G+ +T LG FD + + + KP +RI
Sbjct: 116 YWTYQVCHGRYVIQYHEDKMLTGQVSRTEFYLGNFDSA-----LTASTNEQVKPATRRIE 170
Query: 304 ISHF------YSNGDVCDKT-GRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHYILGVE 146
+ Y++G CD T G+PR T+V C+E L + E +CHY + +
Sbjct: 171 NEDYPYYSVSYNHGTSCDVTGGKPRTTDVVYICVEKVQHKI---LSVTEISSCHYEIVIM 227
Query: 145 SPLIC 131
+ L+C
Sbjct: 228 TDLLC 232
>U23514-6|AAC46544.2| 816|Caenorhabditis elegans Hypothetical
protein F48E8.4 protein.
Length = 816
Score = 54.0 bits (124), Expect = 1e-07
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 7/176 (3%)
Frame = -2
Query: 610 LGDDEDMTSDPPKPVPSVDKRPPPITDDSPVRAFLNGENCLNGGTGWWKYEFCYGKHVLQ 431
L D ED+ D PK + P I D+ +F + G WW Y C G+ + Q
Sbjct: 91 LPDVEDVKKDKPK-----SSKNPKIYGDALAASFYVDKCVKLRGNHWWSYILCRGQTIEQ 145
Query: 430 YHIDRAGEKTTV--MLGRFDEKAHLDWIKDNKGKAPKPIDQRISISHFYSNGDVCD--KT 263
H G++ V +LG FD + +++ D+ + + Y++G CD +
Sbjct: 146 VH-GEPGQEGYVKNILGLFDGSLKMPSYQESTD------DRLLFVEETYTSGTFCDLEEY 198
Query: 262 GRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHYILGVESPLIC---DILPLADEN 104
PR T V+ +C S+ ++E K C Y++ V+ +C + LP + N
Sbjct: 199 REPRMTSVRYECDAQLSTNEVYISSVVEVKPCQYLMIVKVGTLCRYPEFLPASQSN 254
>Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -2
Query: 358 WIKDNKGKAPKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLE 179
W D KG P +I S++ N + ++ EVK C N+ + Q++LY L
Sbjct: 177 WTYDQKGIDYFPYSDKIGTSNYLENEGWYILQTKIKRQEVKYACCPNNYTLLQLTLY-LR 235
Query: 178 PKTCHYILGVESP 140
K Y++ + P
Sbjct: 236 RKPLFYLVNLIIP 248
>Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -2
Query: 358 WIKDNKGKAPKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLE 179
W D KG P +I S++ N + ++ EVK C N+ + Q++LY L
Sbjct: 177 WTYDQKGIDYFPYSDKIGTSNYLENEGWYILQTKIKRQEVKYACCPNNYTLLQLTLY-LR 235
Query: 178 PKTCHYILGVESP 140
K Y++ + P
Sbjct: 236 RKPLFYLVNLIIP 248
>AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl choline
receptor alpha subunitDES-2 protein.
Length = 548
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -2
Query: 358 WIKDNKGKAPKPIDQRISISHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLE 179
W D KG P +I S++ N + ++ EVK C N+ + Q++LY L
Sbjct: 177 WTYDQKGIDYFPYSDKIGTSNYLENEGWYILQTKIKRQEVKYACCPNNYTLLQLTLY-LR 235
Query: 178 PKTCHYILGVESP 140
K Y++ + P
Sbjct: 236 RKPLFYLVNLIIP 248
>Z47358-10|CAA87438.1| 507|Caenorhabditis elegans Hypothetical
protein ZK1307.8 protein.
Length = 507
Score = 30.3 bits (65), Expect = 1.5
Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 15/177 (8%)
Frame = -2
Query: 616 HPLGDDEDMTSDPPKPVPSVDKRPPP----------ITD-DSPVRAFLNGENCLNGGTGW 470
HP DDE M PP+ +K + D D+ +R + N G
Sbjct: 331 HPDEDDEKMPDYPPEVQQLTEKAREARRLFDEVNTKVQDLDAKIREAEDFANSDYGEDSA 390
Query: 469 WKY--EFCYGKHVLQYHIDRA--GEKTTVMLGRFDEKAHLDWIKDNKGKAPKPIDQRISI 302
W + C+ ++V QY G+ T G + + L K+ G P + S
Sbjct: 391 WAALKDKCFDRNVQQYTYQFCPFGQNTQKDTGAYSGTS-LGSFKEWSG----PEGNKYSK 445
Query: 301 SHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHYILGVESPLIC 131
HF +G C G R T++ ++C E + + + EP C Y+ +PL C
Sbjct: 446 MHF-GDGQQC-WNGPKRSTDITIECGEENEL-----VEVTEPAKCEYLFTFRTPLAC 495
>Z47356-9|CAA87420.1| 507|Caenorhabditis elegans Hypothetical
protein ZK1307.8 protein.
Length = 507
Score = 30.3 bits (65), Expect = 1.5
Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 15/177 (8%)
Frame = -2
Query: 616 HPLGDDEDMTSDPPKPVPSVDKRPPP----------ITD-DSPVRAFLNGENCLNGGTGW 470
HP DDE M PP+ +K + D D+ +R + N G
Sbjct: 331 HPDEDDEKMPDYPPEVQQLTEKAREARRLFDEVNTKVQDLDAKIREAEDFANSDYGEDSA 390
Query: 469 WKY--EFCYGKHVLQYHIDRA--GEKTTVMLGRFDEKAHLDWIKDNKGKAPKPIDQRISI 302
W + C+ ++V QY G+ T G + + L K+ G P + S
Sbjct: 391 WAALKDKCFDRNVQQYTYQFCPFGQNTQKDTGAYSGTS-LGSFKEWSG----PEGNKYSK 445
Query: 301 SHFYSNGDVCDKTGRPRQTEVKLKCLENSSSPAQVSLYLLEPKTCHYILGVESPLIC 131
HF +G C G R T++ ++C E + + + EP C Y+ +PL C
Sbjct: 446 MHF-GDGQQC-WNGPKRSTDITIECGEENEL-----VEVTEPAKCEYLFTFRTPLAC 495
>Z79600-12|CAB70221.2| 415|Caenorhabditis elegans Hypothetical
protein F37D6.6 protein.
Length = 415
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 580 PPKPVPSVDKRPPPITDDSP 521
P +P PSV PP+ DDSP
Sbjct: 208 PDRPPPSVPNATPPLPDDSP 227
>Z75540-7|CAB70215.2| 415|Caenorhabditis elegans Hypothetical
protein F37D6.6 protein.
Length = 415
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 580 PPKPVPSVDKRPPPITDDSP 521
P +P PSV PP+ DDSP
Sbjct: 208 PDRPPPSVPNATPPLPDDSP 227
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 601 DEDMTSDPPKPVPSVDKRPPPITDDSP 521
D D P PV SV + PPP+T P
Sbjct: 573 DSDEEFPAPPPVASVMRMPPPVTPPKP 599
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 601 DEDMTSDPPKPVPSVDKRPPPITDDSP 521
D D P PV SV + PPP+T P
Sbjct: 590 DSDEEFPAPPPVASVMRMPPPVTPPKP 616
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 601 DEDMTSDPPKPVPSVDKRPPPITDDSP 521
D D P PV SV + PPP+T P
Sbjct: 702 DSDEEFPAPPPVASVMRMPPPVTPPKP 728
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 619 LHPLGDDEDMTSDPPKPVPSVDKRPPPITDDSPV 518
L P + +P KPV + + P +TDD P+
Sbjct: 655 LRPAFSESKAPQEPSKPVETKENNKPALTDDFPL 688
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 619 LHPLGDDEDMTSDPPKPVPSVDKRPPPITDDSPV 518
L P + +P KPV + + P +TDD P+
Sbjct: 557 LRPAFSESKAPQEPSKPVETKENNKPALTDDFPL 590
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 655 FEKDGETHLKFELHPLGDDEDMTSDPPKPVPSVDKRPPPITDDSPVR 515
F DG+ LK P + + + PP PSV ++P P+ SP+R
Sbjct: 851 FTDDGQAVLKNA--PRQTETQLKAPPP---PSVARQPSPVRQPSPIR 892
>U58758-2|AAB93428.1| 424|Caenorhabditis elegans Hypothetical
protein ZK1127.6 protein.
Length = 424
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2
Query: 730 HQSIRLMDNADQTVKDILAVLKVGK 656
H+S +LM+ +Q +KDIL+VL+ K
Sbjct: 357 HKSKKLMEEGEQHMKDILSVLENDK 381
>U56966-4|AAA98719.2| 906|Caenorhabditis elegans Ace(angiotensin
converting enzyme)-like non-peptidase protein 1, isoform
a protein.
Length = 906
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -2
Query: 703 ADQTVKDILAVLKVGK-FE-KDGETHLKFELHPLGDDEDMTSDPPKPVPSVDKRPPPITD 530
AD+ KD AV G+ FE D K P+ + E P+P P + P P +
Sbjct: 31 ADEAPKDPEAVFSEGEPFELTDALDTPKNGSVPVPEPEPKPEPEPEPEPKPEPEPSPTPE 90
Query: 529 DSPVRAFLNGEN 494
P F N E+
Sbjct: 91 PEPAIKFDNIES 102
>U56966-3|AAU05584.1| 332|Caenorhabditis elegans Ace(angiotensin
converting enzyme)-like non-peptidase protein 1, isoform
b protein.
Length = 332
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -2
Query: 703 ADQTVKDILAVLKVGK-FE-KDGETHLKFELHPLGDDEDMTSDPPKPVPSVDKRPPPITD 530
AD+ KD AV G+ FE D K P+ + E P+P P + P P +
Sbjct: 31 ADEAPKDPEAVFSEGEPFELTDALDTPKNGSVPVPEPEPKPEPEPEPEPKPEPEPSPTPE 90
Query: 529 DSPVRAFLNGEN 494
P F N E+
Sbjct: 91 PEPAIKFDNIES 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,616,270
Number of Sequences: 27780
Number of extensions: 407220
Number of successful extensions: 1513
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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