Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k04
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.76 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   1.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.4  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 745 SLRFHHQSIRLMDNADQTVKDILAVLKVGKFEKDGETHLKFEL 617
           SLRF++   +L+DN  + + DIL  + V +   + +    F++
Sbjct: 555 SLRFYNVVYKLIDNIKKEIYDILPEVDVEEILGEAKVLQNFDI 597


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 658 KFEKDGETHLKFELH 614
           K+EK+GET+L+ + H
Sbjct: 165 KYEKNGETYLRIKKH 179


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 181 PTSTGRLELDSTNSLD 228
           PTS GR+ L+S + LD
Sbjct: 456 PTSKGRITLNSKDPLD 471


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 431 LEHVLPVAELVFPP 472
           L  VLP   LVFPP
Sbjct: 51  LRQVLPNGNLVFPP 64


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 275 LRQNRPTPA 249
           ++QNRPTPA
Sbjct: 226 IKQNRPTPA 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,408
Number of Sequences: 438
Number of extensions: 4969
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)