Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k02
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   251   7e-68
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    28   1.7  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   3.0  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   5.2  
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    26   5.2  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    25   9.1  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  251 bits (615), Expect = 7e-68
 Identities = 116/247 (46%), Positives = 154/247 (62%), Gaps = 1/247 (0%)
 Frame = -2

Query: 770 NXRKNCTIICEKGEVEEPWFGFNQEFILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIV 591
           N R  C  + EK   +E WFG  QE+ +     RP GWP GGFP P GP+YC +G+ ++ 
Sbjct: 113 NHRDACAKLLEKHADKETWFGIEQEYTMLDYYDRPFGWPKGGFPGPQGPFYCGVGTGRVF 172

Query: 590 ARDLMEAFYRCCLYAGVQLNGINPGTVPSQWNFQVGPSPGIRGADDLWMARYILSRLAEE 411
           ARD++EA Y+ CLYAG+ ++GIN   +PSQW +QVGP  GI   D LWM+R++L R+AE+
Sbjct: 173 ARDIVEAHYKACLYAGINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMSRFLLHRIAED 232

Query: 410 YGTVASFEPQP-TADWPGNGTFVYFSTKDMREDDGILVIERAIDKLARRHGAHINEYDAN 234
           +G   SF P+P   DW G G     STKD R + GI  IE  ++K A+RH  HI  Y   
Sbjct: 233 FGVKISFHPKPILGDWNGAGCHTNVSTKDTRAEGGIKAIESYLEKFAKRHKEHIAVY--- 289

Query: 233 NGADNVRRLVGKNGMPHIRDFTAGVANRSCCVRIPRQVSEDKRGYLEDRRPAANADPYRI 54
            G DN  RL G++    I  FT GVA+R   VRIPR V+ +  GY EDRRPA++ DPY +
Sbjct: 290 -GDDNDLRLTGRHETGSIDKFTYGVADRGASVRIPRSVAMNGCGYFEDRRPASSIDPYLV 348

Query: 53  ISIMLKT 33
             I+ +T
Sbjct: 349 TGIITET 355


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -2

Query: 665 LGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAGVQLNGINPGTVP 507
           LG   G   A P P++C+I  +K      MEA    CL   VQL        P
Sbjct: 257 LGQECGTLVAIPTPHHCSIDYEK------MEALIETCLQRSVQLGITGKNVTP 303


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 576 GSLLQVLFIRWSSVKWNKSGNGALPVELPGRSKSWYSW 463
           G  L++  ++ S  KW  S + +LP  L  R  S +SW
Sbjct: 598 GENLKITTLQSSGRKWLDSLSSSLPSSLLNRGSSTHSW 635


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 454 IYGWLGTFYHDSPRSTARWPPSNHSPQRIGRETVPLCTFPPR 329
           + G  G     SP STAR   +   P  +G +T  L   PP+
Sbjct: 29  VNGTNGGMKQVSPVSTARTSIARRPPSTVGSQTGSLVNAPPK 70


>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 258 GTVSTRQLIYSPLDH*YAVIFSHVLGGKVHKGTVSRP-IRCGLWFEGGHRAV 410
           G VS+R ++   LDH   +IF+++   K  K   S P      W+E   R V
Sbjct: 69  GRVSSRLVLLKELDHRGFIIFTNLGTSKKAKDLKSNPYASLSFWWEPLQRQV 120


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 227 ADNVRRLVGKNGMPHIRDFTAGVANRS 147
           AD +R + G     H+RDF+ G    S
Sbjct: 221 ADKIRHIYGPRVASHLRDFSLGEGQSS 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,366,989
Number of Sequences: 5004
Number of extensions: 73109
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)