Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14k02
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 262 3e-70
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 249 2e-66
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 232 2e-61
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 230 1e-60
05_07_0140 - 27982037-27983794 34 0.11
10_08_0249 + 16172811-16172987,16174048-16174299,16174426-161745... 33 0.19
06_02_0237 + 13341469-13342259,13342839-13343223,13343314-133434... 31 1.0
09_04_0402 - 17304828-17305622 31 1.3
12_02_1277 + 27497773-27500241 30 2.3
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 29 3.1
05_03_0586 + 15782645-15782721,15782781-15783405 29 3.1
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 29 4.1
02_04_0470 - 23183925-23184743,23184929-23185153 29 4.1
12_01_1094 + 11419208-11419419,11420188-11420222,11420398-114204... 29 5.4
03_06_0036 + 31208993-31209391,31209616-31209693,31209881-312099... 29 5.4
09_06_0256 + 21887666-21888670 28 7.2
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505... 28 7.2
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 28 9.5
07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547... 28 9.5
05_03_0618 - 16262826-16263097,16263111-16263183 28 9.5
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 262 bits (641), Expect = 3e-70
Identities = 124/253 (49%), Positives = 160/253 (63%), Gaps = 4/253 (1%)
Frame = -2
Query: 773 SNXRKNCTIICEKGEV--EEPWFGFNQEFILTSSD-GRPLGWPVGGFPAPPGPYYCAIGS 603
+N R N I EV EEPW+G QE+ L D PLGWPVGGFP P GPYYC IG+
Sbjct: 104 TNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGA 163
Query: 602 DKIVARDLMEAFYRCCLYAGVQLNGINPGTVPSQWNFQVGPSPGIRGADDLWMARYILSR 423
DK RD++++ Y+ CLYAG+ ++GIN +P QW FQVGPS GI D +W+ARYIL R
Sbjct: 164 DKSFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDQVWVARYILER 223
Query: 422 LAEEYGTVASFEPQP-TADWPGNGTFVYFSTKDMREDDGILVIERAIDKLARRHGAHINE 246
+ E G V SF+P+P DW G G +STK MR D G +I+ AI+KL RH HI+
Sbjct: 224 ITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEIIKSAIEKLKLRHKEHISA 283
Query: 245 YDANNGADNVRRLVGKNGMPHIRDFTAGVANRSCCVRIPRQVSEDKRGYLEDRRPAANAD 66
Y G N RRL G++ I F+ GVANR VR+ R+ ++ +GY EDRRPA+N D
Sbjct: 284 Y----GEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMD 339
Query: 65 PYRIISIMLKTCI 27
PY + S++ +T I
Sbjct: 340 PYIVTSMIAETTI 352
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 249 bits (609), Expect = 2e-66
Identities = 118/256 (46%), Positives = 157/256 (61%), Gaps = 4/256 (1%)
Frame = -2
Query: 773 SNXRKNCTIICEKGEV--EEPWFGFNQEFILTSSD-GRPLGWPVGGFPAPPGPYYCAIGS 603
+N R N I +V EEPW+G QE+ L PLGWP+GG+P P GPYYCA G+
Sbjct: 131 TNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLGWPLGGYPGPQGPYYCAAGA 190
Query: 602 DKIVARDLMEAFYRCCLYAGVQLNGINPGTVPSQWNFQVGPSPGIRGADDLWMARYILSR 423
DK RD+++A Y+ CL+AG+ ++GIN +P QW FQ+GP G+ D +W+ARYIL R
Sbjct: 191 DKSYGRDIVDAHYKACLFAGINISGINAEVMPGQWEFQIGPVVGVSAGDHVWVARYILER 250
Query: 422 LAEEYGTVASFEPQP-TADWPGNGTFVYFSTKDMREDDGILVIERAIDKLARRHGAHINE 246
+ E G V SF+P+P DW G G +STK MR + G VI++AI KL RH HI
Sbjct: 251 ITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRSNGGYEVIKKAIKKLGMRHREHIAA 310
Query: 245 YDANNGADNVRRLVGKNGMPHIRDFTAGVANRSCCVRIPRQVSEDKRGYLEDRRPAANAD 66
Y G N RRL G++ I +F GVANR VR+ R +D +GY EDRRPA+N D
Sbjct: 311 Y----GDGNERRLTGRHETADINNFVWGVANRGASVRVGRDTEKDGKGYFEDRRPASNMD 366
Query: 65 PYRIISIMLKTCIFDE 18
PY + +++ +T I E
Sbjct: 367 PYLVTAMIAETTILWE 382
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 232 bits (568), Expect = 2e-61
Identities = 113/243 (46%), Positives = 151/243 (62%), Gaps = 6/243 (2%)
Frame = -2
Query: 719 PWFGFNQEFILTSSDGR-PLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYAG 543
PWFG QE+ L D PLGWPVGG+P P GPYYCA+GSDK RD+ +A Y+ CLYAG
Sbjct: 923 PWFGIEQEYTLLQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAG 982
Query: 542 VQLNGINPGTVPSQWNFQVGPSPGIRGADDLWMARYILSRLAEEYGTVASFEPQP-TAD- 369
+ ++G N +P QW +QVGPS GI D +W++RYIL R+ E+ G V + +P+P AD
Sbjct: 983 INISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQADS 1042
Query: 368 ---WPGNGTFVYFSTKDMREDDGILVIERAIDKLARRHGAHINEYDANNGADNVRRLVGK 198
+ + TK MRED G VI++AI L+ RH HI+ Y G N RRL G
Sbjct: 1043 VICFVIRLRLILQITKSMREDGGFEVIKKAILNLSLRHDLHISAY----GEGNERRLTGL 1098
Query: 197 NGMPHIRDFTAGVANRSCCVRIPRQVSEDKRGYLEDRRPAANADPYRIISIMLKTCIFDE 18
+ I +F+ GVANR C +R+ R +GYLEDRRPA+N DPY + +++ +T I E
Sbjct: 1099 HETASIDNFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYVVTALLAETTILWE 1158
Query: 17 *SL 9
+L
Sbjct: 1159 PTL 1161
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 230 bits (562), Expect = 1e-60
Identities = 110/234 (47%), Positives = 145/234 (61%), Gaps = 1/234 (0%)
Frame = -2
Query: 725 EEPWFGFNQEFILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKIVARDLMEAFYRCCLYA 546
E PW+G QE+ L D + WP+G PGPYYCA G++K RD+++A Y+ C+YA
Sbjct: 122 EVPWYGIEQEYTLLQKD---VNWPLGW----PGPYYCAAGAEKAFGRDIVDAHYKACIYA 174
Query: 545 GVQLNGINPGTVPSQWNFQVGPSPGIRGADDLWMARYILSRLAEEYGTVASFEPQP-TAD 369
G+ ++GIN +P QW FQVGPS GI AD +W+ARYIL R+ E G V S +P+P D
Sbjct: 175 GINISGINGEVMPGQWEFQVGPSVGIAAADQVWVARYILERVTEVAGVVLSLDPKPIPGD 234
Query: 368 WPGNGTFVYFSTKDMREDDGILVIERAIDKLARRHGAHINEYDANNGADNVRRLVGKNGM 189
W G G FSTK MRE G VI++AIDKLA RH HI Y G N RRL G++
Sbjct: 235 WNGAGAHTNFSTKSMREPGGYEVIKKAIDKLALRHKEHIAAY----GEGNERRLTGRHET 290
Query: 188 PHIRDFTAGVANRSCCVRIPRQVSEDKRGYLEDRRPAANADPYRIISIMLKTCI 27
I F GVANR +R+ R ++ +GY EDRRPA+N DPY + ++ +T +
Sbjct: 291 ADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIAETTL 344
>05_07_0140 - 27982037-27983794
Length = 585
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Frame = +1
Query: 259 APCRRANLSIARSITNMP--SSSLMSLVEKYTKVPFPGQSAVGCGSKEATVPYSS----- 417
AP + A SI P S + + +T+ P G +A+ S+++ ++S
Sbjct: 23 APASLGGGAAAASIPFAPFSRSDKLGRIADWTRNP-AGPAALAAASRDSVFDFTSVDDSL 81
Query: 418 --ASRDKMYRAIHKSSAPRIPGLGPTWKFHWEGTVP 519
A+ D +R + PR P GP W+F+ +P
Sbjct: 82 AAAAEDSSFRLVDAKPPPRHPRFGPKWRFNQRPQLP 117
>10_08_0249 +
16172811-16172987,16174048-16174299,16174426-16174505,
16174616-16174701,16174799-16174904,16174987-16175143,
16175220-16175315,16175797-16175845,16175946-16176205,
16176327-16176499,16176692-16176812,16176923-16176975,
16177088-16177217,16177371-16177516,16177887-16178075,
16178317-16178549,16178784-16178932,16179042-16179104
Length = 839
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = -2
Query: 461 ADDLWMARYILSRLAEEYGTVASFEPQPTADWPGNGTFVYFS 336
AD L AR I+ +A ++G +A+F P+P + G+G+ V+ S
Sbjct: 603 ADKLIYAREIIKSVARKHGLLATFLPKPDLNDIGSGSHVHLS 644
>06_02_0237 +
13341469-13342259,13342839-13343223,13343314-13343427,
13343517-13344011
Length = 594
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = -2
Query: 419 AEEYGTVASFEP-QPTADWPGN-----GTFVYFSTKDMREDDGILVIERAIDKLARRH 264
A EYG S P QP AD+P N G +V K ++ ++ I V ER +A RH
Sbjct: 326 AGEYGLGVSAVPLQPEADYPANAAYMDGYYVDADGKPVKSENIICVFERYAGDIAWRH 383
>09_04_0402 - 17304828-17305622
Length = 264
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 412 SSASRDKMYRAIHKSSAPRIPGLGPTWK 495
SS +D+ Y+A K+S+P GLG +W+
Sbjct: 97 SSKEKDREYKAKSKASSPFFSGLGGSWR 124
>12_02_1277 + 27497773-27500241
Length = 822
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = -2
Query: 314 DGILVIERAIDKLARRHGAHINEYDANNGADNVRRLV 204
DG+ V++ + ++ ++ G ++ Y ++GA VRR++
Sbjct: 507 DGVTVVDEEVSEMRKQIGEALDAYQGDDGAVRVRRVL 543
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 671 RPLGWPVGGFPAPPGPYY 618
RPLG P GGFP P YY
Sbjct: 300 RPLGPPGGGFPVEPFAYY 317
>05_03_0586 + 15782645-15782721,15782781-15783405
Length = 233
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 230 GADNVRRLV-GKNGMPHIRDFTAGVANRSCCVRIPR 126
GA ++ RL G+PH+++ G+ R C V+I R
Sbjct: 185 GAPSLLRLAYSSRGVPHVKERDTGLVGRFCLVKIGR 220
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 355 PFPGQSAVGCGSKEATVPYSS--ASRDKMYRAIHKSSAPRIPGL 480
P GQ A + EAT P+ + K Y I K++ PR+PG+
Sbjct: 739 PVEGQEAALVAAGEATAPFRTWKGIATKGYSLIIKANNPRLPGV 782
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -1
Query: 534 KWNKSGNGALPVELPGRSKSWYSWSG*FMDG--SVHFITTRRGVRHGGLLRTTAHSGLAG 361
+W+ + ALP R S SW G +DG + T+RR RH L+ A S L+
Sbjct: 172 RWSPAKARALPPPPSLRYPSRSSWDGADLDGPTAASTTTSRRRRRHHRLVPPPAASPLSN 231
Query: 360 KRYLC 346
++ C
Sbjct: 232 RQRHC 236
>12_01_1094 +
11419208-11419419,11420188-11420222,11420398-11420438,
11421849-11421938,11422556-11422630,11427609-11427965
Length = 269
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 196 MECHTSGISLQVWLIGVVASGYLGKFPRTSGAI*KIGDPQ 77
++CH S ++W+IG +G +G FP +G IG +
Sbjct: 156 VDCHYSLPDDKLWVIGGTTAGTIGYFPVRAGLEGAIGSAE 195
>03_06_0036 +
31208993-31209391,31209616-31209693,31209881-31209946,
31211556-31211621,31211815-31211865,31212635-31212928
Length = 317
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 295 SITNMPSSSLMSLVEKYTKVPFPGQSAVGCGSKEATVPYSSASRDKMYRAIHKSSAPRIP 474
S+++M SS + + F + + GC ++AT P ++ + +K R + RI
Sbjct: 111 SVSSMSSSPTATAISSSKSPAFKKKGSRGCDQRKATAPAAATTTNKRPRVRRERLGERII 170
Query: 475 GL 480
L
Sbjct: 171 AL 172
>09_06_0256 + 21887666-21888670
Length = 334
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/89 (23%), Positives = 31/89 (34%)
Frame = +1
Query: 232 LLASYSLMWAPCRRANLSIARSITNMPSSSLMSLVEKYTKVPFPGQSAVGCGSKEATVPY 411
LL +Y W RA L + + S +E PG S ++
Sbjct: 34 LLEAYEAKWLLRNRAKLKWSDWVDIAHEVSAHCAMENAAATGKPGSSTAKTPNQCKNKIE 93
Query: 412 SSASRDKMYRAIHKSSAPRIPGLGPTWKF 498
S R + A + P G GP+W+F
Sbjct: 94 SMKKRYRAESAAAARAGPAAAGAGPSWRF 122
>08_02_0743 -
20647440-20647927,20647997-20648426,20650127-20650570,
20650639-20650692
Length = 471
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = -1
Query: 591 CERSYGSLLQV-LFIRWSSVKWNKSGNGAL---PVELPGRSKSWYS 466
C +SYGS+LQV L + S +K + G+L P+ L G S W S
Sbjct: 342 CSKSYGSMLQVALSLAISGLKARQKSIGSLSKAPLLLVGWSTFWPS 387
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 487 SVQVLVFVERMIYGWLGTFYHDSPRSTARWP 395
++ +LV E + +GW GT Y D R T P
Sbjct: 454 ALAILVCHEMVKFGWAGTVYSDQDRHTVVRP 484
>07_01_0716 +
5472618-5472818,5472943-5472985,5473672-5473761,
5473863-5473938,5474435-5474504,5474911-5475075,
5475261-5475404,5475547-5475651,5475876-5476022,
5476463-5476531,5476882-5476989,5477392-5477483,
5477559-5477598,5478129-5478221,5478386-5478958,
5479596-5479610
Length = 676
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 331 LVEKYTKVPFPGQSAVGCGSKEATVPYSSASRDKMYRAIHKSSAPRIPGLGPTWKFHWEG 510
L+ T +P P SAV G AT+ ++ D I +++P P L +W+ + G
Sbjct: 531 LLSSPTLLP-PSSSAVTAGGSTATIAGEGSTSDSGLSGIPPAASPPPPPLPLSWRRNERG 589
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 210 ARRKKWNATHQGFHCRCG 157
ARR++W + HCRCG
Sbjct: 13 ARRRRWLKRRRSGHCRCG 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,479,442
Number of Sequences: 37544
Number of extensions: 563529
Number of successful extensions: 1615
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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