Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14k02
(774 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical... 271 4e-73
AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical... 271 4e-73
Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical pr... 266 1e-71
Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical pr... 262 2e-70
Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical pr... 250 6e-67
AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine syn... 227 9e-60
U55371-2|AAL02524.1| 402|Caenorhabditis elegans Hypothetical pr... 31 1.2
U55371-1|AAL02525.1| 432|Caenorhabditis elegans Hypothetical pr... 31 1.2
AY919615-1|AAY16564.1| 432|Caenorhabditis elegans FLP-2 recepto... 31 1.2
AY919614-1|AAY16563.1| 402|Caenorhabditis elegans FLP-2 recepto... 31 1.2
U00033-1|AAC48292.3| 731|Caenorhabditis elegans Hypothetical pr... 30 2.1
AL117202-18|CAB57896.3| 765|Caenorhabditis elegans Hypothetical... 29 3.7
Z82051-2|CAB04816.1| 237|Caenorhabditis elegans Hypothetical pr... 29 4.9
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 28 6.4
AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical ... 28 6.4
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 28 6.4
Z54342-7|CAA91149.1| 460|Caenorhabditis elegans Hypothetical pr... 28 8.5
U88314-9|AAF99881.1| 408|Caenorhabditis elegans Hypothetical pr... 28 8.5
>AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical
protein Y105C5B.28b protein.
Length = 385
Score = 271 bits (664), Expect = 4e-73
Identities = 120/248 (48%), Positives = 158/248 (63%), Gaps = 1/248 (0%)
Frame = -2
Query: 773 SNXRKNCTIICEKGEVEEPWFGFNQEFILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKI 594
+N R+ C + EK + PWFG QE+ L DG P GWP GFP P GPYYC +G++K+
Sbjct: 113 TNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPFGWPKNGFPGPQGPYYCGVGANKV 172
Query: 593 VARDLMEAFYRCCLYAGVQLNGINPGTVPSQWNFQVGPSPGIRGADDLWMARYILSRLAE 414
RD++EA YR CLYAG+Q++G N +P QW FQVGP GI+ D LW+ARY+L R+AE
Sbjct: 173 YGRDIVEAHYRACLYAGIQISGTNAEVMPGQWEFQVGPCEGIQMGDQLWVARYLLQRVAE 232
Query: 413 EYGTVASFEPQP-TADWPGNGTFVYFSTKDMREDDGILVIERAIDKLARRHGAHINEYDA 237
E+G +ASF+ +P DW G G FST MR GI I AI+KL+ H HI YD
Sbjct: 233 EFGVIASFDCKPIKGDWNGAGCHTNFSTDKMRNPGGIDEIMSAINKLSLVHPQHIAYYDP 292
Query: 236 NNGADNVRRLVGKNGMPHIRDFTAGVANRSCCVRIPRQVSEDKRGYLEDRRPAANADPYR 57
+ G DN RRL G + I F+ GVA+R+ +RIPR +D GY EDRRP++N DPY
Sbjct: 293 HGGKDNERRLTGLHETASIDKFSYGVASRASSIRIPRSTDDDGYGYFEDRRPSSNCDPYT 352
Query: 56 IISIMLKT 33
+ +++T
Sbjct: 353 VTGALVRT 360
>AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical
protein Y105C5B.28a protein.
Length = 388
Score = 271 bits (664), Expect = 4e-73
Identities = 120/248 (48%), Positives = 158/248 (63%), Gaps = 1/248 (0%)
Frame = -2
Query: 773 SNXRKNCTIICEKGEVEEPWFGFNQEFILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKI 594
+N R+ C + EK + PWFG QE+ L DG P GWP GFP P GPYYC +G++K+
Sbjct: 116 TNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPFGWPKNGFPGPQGPYYCGVGANKV 175
Query: 593 VARDLMEAFYRCCLYAGVQLNGINPGTVPSQWNFQVGPSPGIRGADDLWMARYILSRLAE 414
RD++EA YR CLYAG+Q++G N +P QW FQVGP GI+ D LW+ARY+L R+AE
Sbjct: 176 YGRDIVEAHYRACLYAGIQISGTNAEVMPGQWEFQVGPCEGIQMGDQLWVARYLLQRVAE 235
Query: 413 EYGTVASFEPQP-TADWPGNGTFVYFSTKDMREDDGILVIERAIDKLARRHGAHINEYDA 237
E+G +ASF+ +P DW G G FST MR GI I AI+KL+ H HI YD
Sbjct: 236 EFGVIASFDCKPIKGDWNGAGCHTNFSTDKMRNPGGIDEIMSAINKLSLVHPQHIAYYDP 295
Query: 236 NNGADNVRRLVGKNGMPHIRDFTAGVANRSCCVRIPRQVSEDKRGYLEDRRPAANADPYR 57
+ G DN RRL G + I F+ GVA+R+ +RIPR +D GY EDRRP++N DPY
Sbjct: 296 HGGKDNERRLTGLHETASIDKFSYGVASRASSIRIPRSTDDDGYGYFEDRRPSSNCDPYT 355
Query: 56 IISIMLKT 33
+ +++T
Sbjct: 356 VTGALVRT 363
>Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical
protein F26D10.10 protein.
Length = 369
Score = 266 bits (652), Expect = 1e-71
Identities = 113/255 (44%), Positives = 162/255 (63%), Gaps = 3/255 (1%)
Frame = -2
Query: 773 SNXRKNCTIICEKGEVEEPWFGFNQEFILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKI 594
+N R+NC I +K PWFG QE+++ D PLGWP G+PAP G YYC +G+D+
Sbjct: 115 TNHRQNCAAIMKKVAEHHPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGVGADRA 174
Query: 593 VARDLMEAFYRCCLYAGVQLNGINPGTVPSQWNFQVGPSPGIRGADDLWMARYILSRLAE 414
R+++E YR CL+AG+ + G N P QW FQ+G GI D LWMARYIL R+AE
Sbjct: 175 FGREVVETHYRACLHAGINIFGTNAEVTPGQWEFQIGTCEGIDMGDQLWMARYILHRVAE 234
Query: 413 EYGTVASFEPQP---TADWPGNGTFVYFSTKDMREDDGILVIERAIDKLARRHGAHINEY 243
++G S +P+P DW G G FST +MR +G+ I A+ L R H ++ Y
Sbjct: 235 QFGVCVSLDPKPKVTMGDWNGAGCHTNFSTIEMRRPNGLNAIFEAMKGLERTHSEAMSVY 294
Query: 242 DANNGADNVRRLVGKNGMPHIRDFTAGVANRSCCVRIPRQVSEDKRGYLEDRRPAANADP 63
D N G DN+RRL G++ F+ G+ANR+C +RIPRQV+++ +GYLEDRRP++N DP
Sbjct: 295 DPNGGRDNLRRLTGRHETSQADKFSWGIANRACSIRIPRQVADETKGYLEDRRPSSNCDP 354
Query: 62 YRIISIMLKTCIFDE 18
Y + ++++K+C+ +
Sbjct: 355 YLVTAMIVKSCLLSD 369
>Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical
protein C28D4.3 protein.
Length = 368
Score = 262 bits (642), Expect = 2e-70
Identities = 114/254 (44%), Positives = 162/254 (63%), Gaps = 3/254 (1%)
Frame = -2
Query: 773 SNXRKNCTIICEKGEVEEPWFGFNQEFILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKI 594
+N R+ C + +K ++PWFG QE+++ D PLGWP G+PAP G YYC IG+D+
Sbjct: 115 TNHRQMCAELMKKVSDQQPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGIGADRA 174
Query: 593 VARDLMEAFYRCCLYAGVQLNGINPGTVPSQWNFQVGPSPGIRGADDLWMARYILSRLAE 414
R+++E YR CL+AG+ + G N P QW FQ+G GI D LWMARYIL R+AE
Sbjct: 175 FGREVVETHYRACLHAGITIFGSNAEVTPGQWEFQIGTCLGIEMGDQLWMARYILHRVAE 234
Query: 413 EYGTVASFEPQP---TADWPGNGTFVYFSTKDMREDDGILVIERAIDKLARRHGAHINEY 243
++G S +P+P DW G G FST DMR DG+ I A++ L + H + Y
Sbjct: 235 QFGVCVSLDPKPRVTMGDWNGAGCHTNFSTIDMRRPDGLETIIAAMEGLKKTHSEAMKVY 294
Query: 242 DANNGADNVRRLVGKNGMPHIRDFTAGVANRSCCVRIPRQVSEDKRGYLEDRRPAANADP 63
D N G DN+RRL G++ F+ G+ANR+C VRIPRQV+++ RGYLEDRRP++N DP
Sbjct: 295 DPNGGHDNLRRLTGRHETSQADQFSWGIANRACSVRIPRQVADEGRGYLEDRRPSSNCDP 354
Query: 62 YRIISIMLKTCIFD 21
Y + ++++K+ + +
Sbjct: 355 YLVTAMIVKSVLIN 368
>Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical
protein K03H1.1 protein.
Length = 367
Score = 250 bits (613), Expect = 6e-67
Identities = 110/253 (43%), Positives = 157/253 (62%), Gaps = 3/253 (1%)
Frame = -2
Query: 773 SNXRKNCTIICEKGEVEEPWFGFNQEFILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKI 594
++ R+ C I + PWFG QE+++ D PLGWP GFP P G YYC++G+D+
Sbjct: 115 TSHRQACAEIMHEIRDTRPWFGMEQEYLIVDRDEHPLGWPKHGFPDPQGKYYCSVGADRA 174
Query: 593 VARDLMEAFYRCCLYAGVQLNGINPGTVPSQWNFQVGPSPGIRGADDLWMARYILSRLAE 414
R+++E YR CL+AG+ + G N P QW FQ+G GI D LWM+RYIL R+AE
Sbjct: 175 FGREVVETHYRACLHAGLNIFGTNAEVTPGQWEFQIGTCEGIDMGDQLWMSRYILHRVAE 234
Query: 413 EYGTVASFEPQP---TADWPGNGTFVYFSTKDMREDDGILVIERAIDKLARRHGAHINEY 243
++G S +P+P DW G G FST +MR GI IE A+ L R H + Y
Sbjct: 235 QFGVCVSLDPKPKVTMGDWNGAGCHTNFSTAEMRAPGGIAAIEAAMTGLKRTHLEAMKVY 294
Query: 242 DANNGADNVRRLVGKNGMPHIRDFTAGVANRSCCVRIPRQVSEDKRGYLEDRRPAANADP 63
D + G DN+RRL G++ F+ GVANR C +RIPRQV+ +++GYLEDRRP++N DP
Sbjct: 295 DPHGGEDNLRRLTGRHETSSADKFSWGVANRGCSIRIPRQVAAERKGYLEDRRPSSNCDP 354
Query: 62 YRIISIMLKTCIF 24
Y++ +++ ++ +F
Sbjct: 355 YQVTAMIAQSILF 367
>AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine
synthetase (glutamate-ammonia ligase) protein 1 protein.
Length = 340
Score = 227 bits (554), Expect = 9e-60
Identities = 105/220 (47%), Positives = 141/220 (64%), Gaps = 5/220 (2%)
Frame = -2
Query: 773 SNXRKNCTIICEKGEVEEPWFGFNQEFILTSSDGRPLGWPVGGFPAPPGPYYCAIGSDKI 594
+N R+ C EK + +EPWFG QEF L +D P WPV GFPAP GPYYC +GSD++
Sbjct: 116 TNTRQQCVDNMEKAKDQEPWFGMEQEFTLLGADKHPYNWPVNGFPAPQGPYYCGVGSDRV 175
Query: 593 VARDLMEAFYRCCLYAGVQLNGINPGTVPSQWNFQVGPSPGIRGADDLWMARYILSRLAE 414
R ++EA YR C+YAG++++G N ++PSQ+ +QVGP GI D LW++RYIL R+ E
Sbjct: 176 FGRHILEAHYRACMYAGIKISGSNVESMPSQFEYQVGPCEGIEMGDQLWVSRYILHRICE 235
Query: 413 EYGTVASFEPQPT-ADWPGNGTFVYFSTKDMR---ED-DGILVIERAIDKLARRHGAHIN 249
+YG V S +P+P +W G G + FST MR ED G IE A+ KL++ H HI
Sbjct: 236 DYGVVCSLDPKPVLGEWSGAGCHLNFSTNVMRTPCEDGTGWKAIEEAVVKLSKVHMHHIA 295
Query: 248 EYDANNGADNVRRLVGKNGMPHIRDFTAGVANRSCCVRIP 129
YD + G DN RRL+G N + F++GVA+R VRIP
Sbjct: 296 YYDPHGGRDNERRLIGANQTETVDAFSSGVADREASVRIP 335
>U55371-2|AAL02524.1| 402|Caenorhabditis elegans Hypothetical
protein T19F4.1a protein.
Length = 402
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 133 ILTQQLRLATPAVKSLMCGIPFFPTSLRTLSAPLLASYSL-MWA 261
IL + + + +V L+C + FF SL TLS P+ +L +WA
Sbjct: 27 ILFSRPHMRSSSVNVLLCALSFFDFSLLTLSIPIFVIPNLDLWA 70
>U55371-1|AAL02525.1| 432|Caenorhabditis elegans Hypothetical
protein T19F4.1b protein.
Length = 432
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 133 ILTQQLRLATPAVKSLMCGIPFFPTSLRTLSAPLLASYSL-MWA 261
IL + + + +V L+C + FF SL TLS P+ +L +WA
Sbjct: 27 ILFSRPHMRSSSVNVLLCALSFFDFSLLTLSIPIFVIPNLDLWA 70
>AY919615-1|AAY16564.1| 432|Caenorhabditis elegans FLP-2 receptor
protein.
Length = 432
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 133 ILTQQLRLATPAVKSLMCGIPFFPTSLRTLSAPLLASYSL-MWA 261
IL + + + +V L+C + FF SL TLS P+ +L +WA
Sbjct: 27 ILFSRPHMRSSSVNVLLCALSFFDFSLLTLSIPIFVIPNLDLWA 70
>AY919614-1|AAY16563.1| 402|Caenorhabditis elegans FLP-2 receptor
protein.
Length = 402
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 133 ILTQQLRLATPAVKSLMCGIPFFPTSLRTLSAPLLASYSL-MWA 261
IL + + + +V L+C + FF SL TLS P+ +L +WA
Sbjct: 27 ILFSRPHMRSSSVNVLLCALSFFDFSLLTLSIPIFVIPNLDLWA 70
>U00033-1|AAC48292.3| 731|Caenorhabditis elegans Hypothetical
protein F37C12.7 protein.
Length = 731
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = -2
Query: 389 EPQPTA-DWPGNGTFVYFSTKDM---REDDGILVIERAIDKLARRHGAHIN 249
+P+ TA D+ VYF+T D+ R+D +L+I+R D + +HG +++
Sbjct: 550 QPEKTAEDFITYKGKVYFATGDIGQKRDDGSLLIIDRKKDLVKLQHGEYVS 600
>AL117202-18|CAB57896.3| 765|Caenorhabditis elegans Hypothetical
protein Y47D3A.22 protein.
Length = 765
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +3
Query: 384 WFEGGHRAVLLGES**NVPSHP*IIRSTNTRTWTDLEVPLGGHRSRIYSI*LNSSV*TAP 563
+F G R +L+ E N P+H + S N WT + L GH I SI N TA
Sbjct: 17 YFTPGDR-ILISE---NHPNHAQRLNSYNNVAWTKTHLALLGHIGYIESI--NEHRHTAN 70
Query: 564 VKGFHKISRN 593
V+ ++ + +N
Sbjct: 71 VRVYYAVPQN 80
>Z82051-2|CAB04816.1| 237|Caenorhabditis elegans Hypothetical
protein T23D5.3 protein.
Length = 237
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +1
Query: 175 SLMCGIPFFPTSLRTLSAPLLASYSLMWAPCRRANLSIARSITNMPSSSLMSLV----EK 342
S G P T+ T++AP + ++ + A L + + +P + + E+
Sbjct: 127 SATTGSPSAATTAATVAAPPTTTAAVSILTLKSAFLYVTKPFQPLPCQTCTPFMNFMDER 186
Query: 343 YTKVPFPGQSAVGCGS 390
YT P G +A GC +
Sbjct: 187 YTCTPTTGMTATGCST 202
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 28.3 bits (60), Expect = 6.4
Identities = 25/82 (30%), Positives = 34/82 (41%)
Frame = +1
Query: 136 LTQQLRLATPAVKSLMCGIPFFPTSLRTLSAPLLASYSLMWAPCRRANLSIARSITNMPS 315
+++ + T V S+M + PTS P +S M P R A+ S AR T PS
Sbjct: 194 ISKPAAVTTKKVGSMMTQSVYTPTS-----RPATSSRLTMKQPARGASTSAARPNTATPS 248
Query: 316 SSLMSLVEKYTKVPFPGQSAVG 381
SS K P P + G
Sbjct: 249 SSNNRRSMDQRKPPMPRKLPFG 270
>AF067624-3|AAM81100.2| 678|Caenorhabditis elegans Hypothetical
protein M01B12.4c protein.
Length = 678
Score = 28.3 bits (60), Expect = 6.4
Identities = 25/82 (30%), Positives = 34/82 (41%)
Frame = +1
Query: 136 LTQQLRLATPAVKSLMCGIPFFPTSLRTLSAPLLASYSLMWAPCRRANLSIARSITNMPS 315
+++ + T V S+M + PTS P +S M P R A+ S AR T PS
Sbjct: 184 ISKPAAVTTKKVGSMMTQSVYTPTS-----RPATSSRLTMKQPARGASTSAARPNTATPS 238
Query: 316 SSLMSLVEKYTKVPFPGQSAVG 381
SS K P P + G
Sbjct: 239 SSNNRRSMDQRKPPMPRKLPFG 260
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 28.3 bits (60), Expect = 6.4
Identities = 25/82 (30%), Positives = 34/82 (41%)
Frame = +1
Query: 136 LTQQLRLATPAVKSLMCGIPFFPTSLRTLSAPLLASYSLMWAPCRRANLSIARSITNMPS 315
+++ + T V S+M + PTS P +S M P R A+ S AR T PS
Sbjct: 184 ISKPAAVTTKKVGSMMTQSVYTPTS-----RPATSSRLTMKQPARGASTSAARPNTATPS 238
Query: 316 SSLMSLVEKYTKVPFPGQSAVG 381
SS K P P + G
Sbjct: 239 SSNNRRSMDQRKPPMPRKLPFG 260
>Z54342-7|CAA91149.1| 460|Caenorhabditis elegans Hypothetical
protein C08H9.12 protein.
Length = 460
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 531 WNKSGNGALPVELPGRSKSWYSWS 460
W + +G LP+ LP R Y+W+
Sbjct: 352 WKDNNSGRLPIALPRRQLRQYNWN 375
>U88314-9|AAF99881.1| 408|Caenorhabditis elegans Hypothetical
protein C46H11.2 protein.
Length = 408
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 446 SINHPLHEYQDLDRPGSSTGRAPFPDLFHLTELQR 550
+I PL EYQ +TGRAP PD L + ++
Sbjct: 292 TITFPLFEYQVKMALSFATGRAPIPDRKMLIDYEK 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,922,554
Number of Sequences: 27780
Number of extensions: 434124
Number of successful extensions: 1177
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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