Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14k02
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   4.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 271 RANLSIARSITNMPSSSLMSLVEKYTKVPFP 363
           R   SI R   +MP    +++++KY+++ FP
Sbjct: 445 RRGASILR--VSMPKIKDVNIIDKYSRIIFP 473


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -2

Query: 206 VGKNGMPHIRDFTAGVANRSCCVRIPRQVSEDKR 105
           + +  M ++ D     + R   +R+P  +SED R
Sbjct: 44  INEESMTYVADIFLAQSWRDSRLRLPENMSEDYR 77


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 449 INHPLHEYQDLDRPGSSTGRAPFPDL 526
           +  P+  Y  L RP       PFP L
Sbjct: 296 VEQPVQVYIQLKRPSDGATSEPFPFL 321


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 449 INHPLHEYQDLDRPGSSTGRAPFPDL 526
           +  P+  Y  L RP       PFP L
Sbjct: 296 VEQPVQVYIQLKRPSDGATSEPFPFL 321


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 172 SLQVWLIGVVASGYLG 125
           S QVWL+G++A   +G
Sbjct: 5   SHQVWLVGLLAFSLVG 20


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 172 SLQVWLIGVVASGYLG 125
           S QVWL+G++A   +G
Sbjct: 5   SHQVWLVGLLAFSLVG 20


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 503 QWNFQVGPSPG 471
           Q NF+ GP+PG
Sbjct: 249 QGNFRAGPTPG 259


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 503 QWNFQVGPSPG 471
           Q NF+ GP+PG
Sbjct: 164 QGNFRAGPTPG 174


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 503 QWNFQVGPSPG 471
           Q NF+ GP+PG
Sbjct: 483 QGNFRAGPTPG 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,556
Number of Sequences: 438
Number of extensions: 6176
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)