Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j23
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    29   0.35 
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   1.4  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    27   1.4  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   4.4  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   5.8  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   5.8  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 192  YGLECKSYCNPRDFTFENSYLYYSPLHKYITAEHFIKTHLYFPVP 326
            +G   K YC   +    N++  Y  L  ++  + F+ +HL+ P+P
Sbjct: 1685 FGSFWKEYCGELNINDPNTWKEYVHLDDHLKLQDFLLSHLHNPLP 1729


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +3

Query: 222 PRDFTFENSYLYYSPLHKYITAEHFIKTHLYFPVPCLSFQNLNSMICICVIMYNSDYPLF 401
           P+    E +Y+ YS        + F K+      P L FQ   + ICI + MYN D  LF
Sbjct: 148 PQQTEREFAYMRYSAAT--CDPQDFSKSLFTLRQP-LFFQPRKTEICIAITMYNEDEVLF 204


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = -3

Query: 139 FKQYLKQLIGQNIKDFLINSMFILFQI 59
           F QY+K+++ +N KDF+  S+ I+F+I
Sbjct: 239 FSQYIKRMLQRNAKDFVPLSL-IVFEI 264


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 354 MICICVIMYNSDYPLFRLYLR 416
           ++CIC I+Y+ D  +F  +++
Sbjct: 689 LVCICNIVYSKDQEIFNKFIK 709


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = +3

Query: 168 VPASVNYYYGLECKSYCNPRDFTFENSYLYYSPLHKYITAEHFIKTHLYFPVPCLSFQ 341
           +P  +  YY +   +   P++  FEN +++ + +  Y++   +  T LYF  P  +++
Sbjct: 420 LPDELKQYYDVIKLNGTIPKNVDFENQHIFTACVEIYLS---YCITQLYFYDPLTNYE 474


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 357 SLNSNSEKTNKEQENINESL*NVQQLCTYGVGYNKDMNFQK*NPVDYN 214
           S N  SE  + E  N+NE   N ++    G   N DM  ++  P+ +N
Sbjct: 514 SYNQQSECRSSEL-NVNEDSANQKEESALGTSDNSDMYEKENTPIHHN 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,143
Number of Sequences: 5004
Number of extensions: 47530
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)