Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j23
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024500-3|AAB70363.1|  314|Caenorhabditis elegans Hypothetical ...    28   5.3  
U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    27   7.0  
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF045639-3|AAL11098.1|  383|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF045639-2|AAC02568.2|  382|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF024500-3|AAB70363.1|  314|Caenorhabditis elegans Hypothetical
           protein K06H6.3 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 450 KSHILLTTNFLVHEVLNL*FCYIL 521
           KSH L TT+  + E+L L FC I+
Sbjct: 57  KSHFLPTTSVFMMEILKLSFCLII 80


>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/48 (25%), Positives = 29/48 (60%)
 Frame = +1

Query: 196 GWNANHIVIHGISLLKIHIFIIAHSIST*LLNIS*RLIYIFLFLVCLF 339
           GW A+ +  + I++  + +F+IA + +  L+N    +++I  ++ C+F
Sbjct: 240 GWFAHPLFYYTIAVYDVALFVIAIATARALVNFDKAVLHIH-YIFCIF 286


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -1

Query: 432 ILCRTDVGTV*ITDNRNYT**HKCRSLNSNSEKTNKEQE 316
           I C  D   + I DNRN T    C  +  N E  N E E
Sbjct: 309 ITCPKDEKKIPICDNRNMTHPTLCSFIQYNCEARNNEDE 347


>AF045639-3|AAL11098.1|  383|Caenorhabditis elegans Hypothetical
           protein B0212.4b protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 450 KSHILLTTNFLVHEVLNL*FCYIL 521
           K+H L TT+  + EVL L FC I+
Sbjct: 59  KTHFLPTTSVFMMEVLKLGFCLII 82


>AF045639-2|AAC02568.2|  382|Caenorhabditis elegans Hypothetical
           protein B0212.4a protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 450 KSHILLTTNFLVHEVLNL*FCYIL 521
           K+H L TT+  + EVL L FC I+
Sbjct: 58  KTHFLPTTSVFMMEVLKLGFCLII 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,281,898
Number of Sequences: 27780
Number of extensions: 256875
Number of successful extensions: 467
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)