Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j21
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    25   3.1  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    25   4.1  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    24   7.1  

>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 150 NGRCIGKACVNYARCNIVSLLKTVKGREI 64
           NG  IG+A VNY+   I  L+K  + +EI
Sbjct: 339 NGEEIGRALVNYSSTEI-DLIKGKRSKEI 366


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 127 VRQLCAVQYSFFAQDG-ERARN 65
           +R+  A  Y+FF +DG ER RN
Sbjct: 105 IREQLARNYAFFGEDGMERLRN 126


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 119 LTHALPIQRPFLLRRDDSCHPPL*SEKRIL*QQ--NHSTSYVYYIPHEV 259
           L H  P +  FLL+  D+C P L     IL ++  NH     +  P E+
Sbjct: 196 LAHVKPFRNYFLLKNFDNC-PQLVQRLAILIRKLWNHKAFKSHVSPQEL 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,680
Number of Sequences: 5004
Number of extensions: 27127
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)