Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j21
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116...    29   1.2  
06_01_0200 - 1543260-1544561                                           27   2.9  
11_06_0179 + 20952070-20955228                                         26   8.7  

>09_06_0076 +
           20710482-20710670,20711313-20711547,20711664-20711689,
           20712000-20712293,20712603-20712728,20712827-20712896,
           20712992-20713182,20713394-20713519,20713878-20714279,
           20714364-20714758,20714861-20715315,20715403-20715524,
           20715653-20715693,20716026-20716129,20716363-20716576,
           20717667-20717780,20718576-20718612
          Length = 1046

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +3

Query: 165 MIRVIRHCKVKKEYYNNKTIALHTFIIY 248
           ++ + RH K +K++Y+  ++ +H FI++
Sbjct: 236 LLSIYRHNKERKKWYSTLSLEIHVFILF 263


>06_01_0200 - 1543260-1544561
          Length = 433

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 222 WFCCYSILFSLYNGG*HESSRRNKNG--RCIGKACVNYARCNIVSLLKTV 79
           WFCC+S + S  +    +   RN  G   CIG  C++    + V +LK +
Sbjct: 33  WFCCHSSVLSGNSKYFADWLSRNDIGSNNCIGVDCISADYEHYVKVLKLI 82


>11_06_0179 + 20952070-20955228
          Length = 1052

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 135 QYSGHFYCVAMIRVIRHCKVKKEYYNN 215
           +YS   Y  A   +  HC+++ +YYNN
Sbjct: 152 KYSVPVYLHAFWTMCPHCQMRYQYYNN 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,611,443
Number of Sequences: 37544
Number of extensions: 157750
Number of successful extensions: 194
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)