Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j21
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   2.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   5.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   7.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   7.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   9.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   9.2  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 231 HTFIIYPMK*LSRVFKFAVKI 293
           H FI + M  LSR  KF + I
Sbjct: 158 HPFISHTMSKLSRAVKFIIVI 178


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 249 PMK*LSRVFKFAVKISPK*TLFYN*KTNY 335
           P+K LS   K   +I    T FYN K +Y
Sbjct: 103 PIKSLSLSIKMLERIWRPDTYFYNGKHSY 131


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 82  RLEQRNYIAPRIIDARLTNTAAI 150
           R+  R Y APR+    L +T+ I
Sbjct: 564 RIALRKYHAPRLAKLALESTSMI 586


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 82  RLEQRNYIAPRIIDARLTNTAAI 150
           R+  R Y APR+    L +T+ I
Sbjct: 602 RIALRKYHAPRLAKLALESTSMI 624


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 11/54 (20%), Positives = 20/54 (37%)
 Frame = -3

Query: 295 EIFTANLKTRDSYFMGYIINV*SAMVLLL*YSFFTLQWRMTRIIATQ*KWPLYW 134
           EIF    +    +F G   ++     L     FF + + +  I+     W  +W
Sbjct: 201 EIFYTTSQQYYGHFAGNFSSISITFKLAREMGFFMMDYYIPSILIVVISWVSFW 254


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 31  ITRKLSFITMHNF 69
           + R++SFI +H F
Sbjct: 357 VKRRISFILVHGF 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,300
Number of Sequences: 438
Number of extensions: 1980
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)