Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14j19
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    29   0.14 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    28   0.33 
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   3.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    23   9.2  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 29.5 bits (63), Expect = 0.14
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +2

Query: 194 RPAHFCREAVMRFGLKGGTAVVTIFESLELISQGG 298
           +P+ F  E V+   L GGTAVV +  +LE I Q G
Sbjct: 89  KPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 156 LPVKYFDLRHWITL**LLVTEATKHQIYHELVYQYISVKTE 34
           LP+ YF L H+I    L V     H+IY  +   Y S+K E
Sbjct: 675 LPINYFGLDHFIH---LRVWYVLLHKIYFFIASAYFSLKNE 712


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = -2

Query: 328 PIYIYN---VNA--SPTLRYKF*ALKYSYNGCPTLQTETHYCFTAEMGRA 194
           P+ +YN   +NA     L+     +   Y  CP L +   +CF+A   +A
Sbjct: 489 PLLLYNPGKINAFSHEMLKRGIAVVVVGYPACPLLTSRVRFCFSASHNKA 538


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 143  ILIYGIGLLCDSCLLRKPLNIKFTMSLFINIFQ*RQNNMC 24
            IL+     L  + L +K  ++ ++ SLF+ I +   N MC
Sbjct: 1400 ILVGDPNQLPPTVLSKKAASLNYSQSLFVRIQKNFSNQMC 1439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,372,781
Number of Sequences: 5004
Number of extensions: 25540
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)